Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01297 ATGTACAACTTTCAACAGTATCGCCATATTCAGGCTCCTGGATGGACATTAGGGTGGACATGGGCTAAAAAGGAAGTGATTTGGAACATGATGGGAAGCCAAACCACAGAGCAAGGAGACTGTTCAAAGTTCAAAGGGAACATCCCACATTGTTGCAAGAAGGACCCAACAGTAGTGGATTTACTGCCAGGAACTCCTTACAACCAGCAGATTGCCAATTGTTGCAAAGGGGGAGTCTTAAACTCATGGGCTCAGGACCCAGAAACTGCAGTAGCGTCATTTCAAATTAGTGTTGGTTCTGCAGGAACAACTAACAAAACAGTCAAACTTCCCAGAAATTTTACCCTGAAAGCACCAGGGCCTGGTTATACTTGTGGCCCTGCAAAGGTTGTCAGACCAACTAAATTTATTACCAATGACAAGAGGAGAACCACTCAGGCTCTGATGACCTGGAATGTTACCTGCACATATTCTCAATTCCTGGCTCAGAAGACCCCAACTTGCTGTGTTTCTCTCTCATCCTTCTATAATGATACAATAGTAAACTGCCCAACTTGCACCTGTGGCTGCCAAAACAAAACAGAACCTGGCAGCTGTGTAGATCCAAAGTCCCCACATATAGCTTCAGTTGTGTCACCACCAGGAAAAGCTATAAATACACCTCTAGTCCGGTGTACCAGCCATATGTGTCCTATTCGAGTGCATTGGCATGTGAAGCTCCAGTATAAAGAGTACTGGAGGATCAAGATCACAATCACAAATTTCAATTACAGAATGAACTATTCACAATGGAACCTTGTTGTGCAGCACCCAAATTTTGATAATCTAACCCAGATTTTCAGCTTTAATTACAAATCACTAACACCTTATGAGGGCTTAAATGATACTGGTATGCTGTGGGGAGTCAAGTTCTATAATGATTTACTTACTTCAGCTGGACCCCTTGGGAATGTGCAATCAGAACTTTTATTTCGAAAGGACAAATCAACCTTCACATTTGATAAAGGATGGGCTTTCCCACGAAGAATTTGTTTCAATGGTGATAACTGTGTAATGCCACCTCCGGATGCCTACCCATGGCTGCCAAATGCAAGTTCAAAACAAGTTTTCTCTTTACTAAGTACAGTGATACGCACCTTAGCTTCTTTGGTAGTCTTACTGACTTAA 1167 0.425 MYNFQQYRHIQAPGWTLGWTWAKKEVIWNMMGSQTTEQGDCSKFKGNIPHCCKKDPTVVDLLPGTPYNQQIANCCKGGVLNSWAQDPETAVASFQISVGSAGTTNKTVKLPRNFTLKAPGPGYTCGPAKVVRPTKFITNDKRRTTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVNCPTCTCGCQNKTEPGSCVDPKSPHIASVVSPPGKAINTPLVRCTSHMCPIRVHWHVKLQYKEYWRIKITITNFNYRMNYSQWNLVVQHPNFDNLTQIFSFNYKSLTPYEGLNDTGMLWGVKFYNDLLTSAGPLGNVQSELLFRKDKSTFTFDKGWAFPRRICFNGDNCVMPPPDAYPWLPNASSKQVFSLLSTVIRTLASLVVLLT. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01297 388 PIRSF COBRA 1 388 IPR006918 GO:0010215|GO:0016020
Seca12g01297 388 PANTHER PROTEIN COBRA 1 376 IPR006918 GO:0010215|GO:0016020
Seca12g01297 388 Pfam COBRA-like protein 1 158 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01297 Seca-Chr12 12709348 12711219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01297 1 374 COBRA Gene Family AT5G60920 80.902 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01297 - - vun:114177145 779.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01297 12 12709348 12711219 Seca12g01297 12 12709348 12711219 ECH
Seca12g01297 12 12709348 12711219 Seca4g03385 4 58950069 58954807 PCT