Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01296 ATGGAATCTTGGAGCTATGTTTCTGAAGAAAAGGGGTATGCCTCCAATGATGCACTCTCGCTTCCCAATACTCTTGGGAGAACTAAAAATTCATTCTTGGGTTGGGAATTGAAAACCCCATGTAGTTTTTCCAACGACATGTTAGCCTTGGGTCAGCAAAATTTTGGGAATCAAGGTTCTGAGGAATTGGGTGTTCCTGAAATGTTGGGGAAACAATTCTCTGATGATCTGATTGGGAGTGTTCCGAGCAGAAAAGATGGTGGCAGAATCACTAGTACTGTTATGGCTGCTCCATATGTGGTGGACTCTAACGGTAGGGATTCCCTCATTGATTTGAAGCTGGGACGATTTGCTGATCATGGAGATGCCATTGATCCAACATTTCCCAAAGGAGCACCAATTTTGTCTTCTTCTGAGTCAGCAACGCCCCCTAAGAGAGTTAGAGCTTCAGGGGTGCATTCACAGACTGCATACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCACCTGTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTCCCACAGTTATAGTGAATGGTATTGAGCAGAGGTTTTGTCAACAATGCAGTAGATTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGCAGCTGCCGTAGACGCCTTGCAGGCCATAATGAGCGTAGAAGAAAACCACAAGTGGGTATTCACTCTGGAAAGTCCGGGAGGTTGCTTCAGCCATGTGGTGATAGCAGATTCCAGGGAGCCAAGCTAACACCAGCATCTTTTATCCGCCCGGAGATGCTCCCTAGTGGGGTCATGCATTCTGACAGATATGGAATAAGTGGCTTCTGGAGACCTATAAAAGCAGAATATGGGGCTGGCTTTAGGCATCTCTCTTCTATGCCTATTACCAATGGACATCCTCTGTCAAGATCTCCATTTCCTTCATACAGCCAAAAACAATTTCCCTTTCTTCATGAAAATGGTGCCACATCCACTACAGGAACTGGAAGCATCTTCTGTGAAAACAACAGCCAATATCCACCTGCCCTTGGGGCTCATAATTCTGGGTTACGACCACTATTCCATGACACCTTAGGAACTGAGGACTTCAATGTTTTTGATACAGCATCGACTGTTCAAGGATTGTCGGGAATTTCAGACTCATGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCAACAGGAATTCCCTTGGCTCACACCTTGGTTATCCCAAGCAGCCATAGTCATCACTATAGCATGAGTCAGGTCTCTGAAAAGATAGGAATAAACTCGCAGTCTTCTTCAAGCCGAGTGTCAGATAGGTTTCCATCAGAACTAAATTCTGCAGATGGAGGTCATCTTGGTCCTGTACTTATATCAGACAATAATGACATAGTCAACTTTGAAATGGAAGACGGGATTTTCCATGATTCAGATTTTGTGAATGTGAAAGATCGTCTTCACTGTGAAGATGGTGCAACCATAGACTTGCTCCAACTGTCATCACAGCTCCAGCGAGTTGAGCATCAGAGGCAATCCTTGCAGACTGTGAAAGCACTTTTGCTGTGGGTGAACTTCTGGGAAACAAGTTGTGCAGCATGTGACAGACATACCTATGCCAGTCATCTTAAGAAAAATGTAGGCTACAGGGCAATAGAAGCTTGA 1695 0.4478 MESWSYVSEEKGYASNDALSLPNTLGRTKNSFLGWELKTPCSFSNDMLALGQQNFGNQGSEELGVPEMLGKQFSDDLIGSVPSRKDGGRITSTVMAAPYVVDSNGRDSLIDLKLGRFADHGDAIDPTFPKGAPILSSSESATPPKRVRASGVHSQTAYCQVYGCNKDLSTCKDYHKRHKVCEVHSKTPTVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQVGIHSGKSGRLLQPCGDSRFQGAKLTPASFIRPEMLPSGVMHSDRYGISGFWRPIKAEYGAGFRHLSSMPITNGHPLSRSPFPSYSQKQFPFLHENGATSTTGTGSIFCENNSQYPPALGAHNSGLRPLFHDTLGTEDFNVFDTASTVQGLSGISDSCCALSLLSSQSQNSSSQSTGIPLAHTLVIPSSHSHHYSMSQVSEKIGINSQSSSSRVSDRFPSELNSADGGHLGPVLISDNNDIVNFEMEDGIFHDSDFVNVKDRLHCEDGATIDLLQLSSQLQRVEHQRQSLQTVKALLLWVNFWETSCAACDRHTYASHLKKNVGYRAIEA. 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01296 564 SUPERFAMILY SBT domain 157 237 IPR036893 GO:0003677|GO:0005634
Seca12g01296 564 Coils Coil 507 527 - -
Seca12g01296 564 Gene3D - 149 220 IPR036893 GO:0003677|GO:0005634
Seca12g01296 564 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 66 524 IPR044817 GO:0003677
Seca12g01296 564 ProSiteProfiles Zinc finger SBP-type profile. 156 233 IPR004333 GO:0003677
Seca12g01296 564 MobiDBLite consensus disorder prediction 224 243 - -
Seca12g01296 564 FunFam Squamosa promoter-binding-like protein 14 150 220 - -
Seca12g01296 564 Pfam SBP domain 159 232 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01296 Seca-Chr12 12688582 12693659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01296 110 276 SBP-box Gene Family AT1G69170 56.548 3.63e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca12g01296 SBP 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01296 - - gmx:100817547 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01296 12 12688582 12693659 Seca12g01296 12 12688582 12693659 ECH