Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01294 ATGGGAAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTCACTTTTGCCAAGAGAAGAAATGGGCTCCTCAAGAAGGCCTATGAGCTCTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCTAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCCAGCATTGTGAAAACACTAGAGAGATACCAGAAGTACAGTTACAGTTCACTGGAGACCAGCAGACCAGCCAATGACACTCAGGTGAGATATCTTTGTAACTATCAGGAATATGTGAGATTAAAAGCAAAGGTAGAAGTCCTGCAGCGTTCACAAAGGAACCTTCTTGGGGAAGATCTTGTCCATATGAATACAACTGAGCTCGAGCAGCTTGAGAATCAACTGGAGGCAGCACTCAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGATCAACTCACAGATCTTCACAACCGGGAAACAGTGCTTGTTGAAACTAATAATGCGTTAAGGAGTAAGTTGGAAGAAACTAATAACTCACAAGTTCCAATGAGACTGGGTTTGGAATGTGGAGAGCCTAATATCCATTACAACCGCTTTCCTCCTCAATCAGAAGGGTTTTTCCAGCCTGTGGGAGTGAATCCCAACTTGCAAATTGGATACAATCCGGGTACTACTACTGAGGATGTAAACGTCGCAGCTTCATCCTTAAATGTGCATGGATTTATCTCTGGGTGGATGCTTTGA 750 0.4387 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSIVKTLERYQKYSYSSLETSRPANDTQVRYLCNYQEYVRLKAKVEVLQRSQRNLLGEDLVHMNTTELEQLENQLEAALKNIRSTKTQFMLDQLTDLHNRETVLVETNNALRSKLEETNNSQVPMRLGLECGEPNIHYNRFPPQSEGFFQPVGVNPNLQIGYNPGTTTEDVNVAASSLNVHGFISGWML. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01294 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca12g01294 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca12g01294 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca12g01294 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca12g01294 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca12g01294 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca12g01294 249 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g01294 249 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Seca12g01294 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca12g01294 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Seca12g01294 249 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Seca12g01294 249 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Seca12g01294 249 Pfam K-box region 94 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g01294 249 FunFam MADS-box transcription factor 1 13 88 - -
Seca12g01294 249 Coils Coil 121 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01294 Seca-Chr12 12645547 12649529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01294 1 249 MADS-box Gene Family AT5G15800 55.263 1.53e-89 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca12g01294 K-box 3.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01294 K09264 - gmx:100797819 385.956