Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01293 ATGGGGAGGGGAAGAGTGCAGTTAAAGAGGATTGAGAACAAGATCAATAGACAGGTGACGTTCTCCAAGAGAAGGTCTGGTTTGCTCAAGAAAGCCAATGAGATCTCTGTGCTTTGCGATGCTGAAGTCGCTCTCATTGTCTTCTCTACTAAAGGCAAGCTTTTCCAGTACTCCAGCGACCCTTGTATGGAAAGAATTCTTGAACGGTATGAGAGATATTCGTATGCGGAGAGGCAGCTTGTGACAAATGATCAGGCACCAAATGAAAATTGGGTTCTAGAACACGCAAAGCTCAAGGCTAGGATGGAAGTCCTACAGAGAAATCAAAGGAATTTTATGGGAGAAGAACTGGATAGCTTAACTCTGAAACAGCTTCAGAATTTGGAACAACAACTTGATTCTGCCCTCAAACACATTAGATCAAGGAAGAACCAAGTCTTACATGAATCTATTTCAGAGCTTCAGAAAAAGGATAAGGCACTCCAAGAACATAACAACTTGCTCGCCAAAAAGATAAAGGAAAAAGAGAAGGCGGTGGCCCAAGAGGAGCAAAGGGGGCTGCAAAACAGTGTGGATATGACCACCTCTGTCCTTGTAACTCAACCATTGGAGTCCTTGAATACTGGTGCCACACCTCGTGTTCGAGCCTGTTCTGCATCTTCATTTCAATCCAAATATGCTAACAGAACAGAGTTTTCAAGCAATGGAGATCAAGAGAAGATTGATAACAAGGGAGGTGAAACTGGCAATAAGGTAATGGTGGTTGTGGATCCTAGCTTTGAAGCTAAAGGGGCTCTTGAATGGGCACTCTCTCACACTGTTCAGAGCCAGGACACTGTTGTTCTTGTTCATGTAGCCAGGCCCAATAGAGAAAGTTCTGAGTCTGCTGGGAAGTTTAATCTGAAGGCTTATCAACTTCTCCTAGATATGAAAAGCATGTGTGAATTGAAGAGACCTGGGGTGGTGGTGAATGTGGTGATGCTTGAAGGGGAGGAAAAGGGTGCTGCTATAGTGCAAGAGGCAAAGCAACAGAGGGTGTCATTATTGGTTGTGGGACAGAAGAAGAGATCCATTTTGTGGGGCTTAATGAGGAGGTGGACACGAAGGAGAAGAAGGGCTGGGGTTGTGGAGTATTGTATACAGAACTCACCTTGCATGACCATTGCAGTGAGGAGGAAGAATAAGAAACTTGGTGGCTATTTGATTACTACCAAACGCCATAAAAACTTTTGGCTTTTGGCTTAG 1245 0.4426 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFQYSSDPCMERILERYERYSYAERQLVTNDQAPNENWVLEHAKLKARMEVLQRNQRNFMGEELDSLTLKQLQNLEQQLDSALKHIRSRKNQVLHESISELQKKDKALQEHNNLLAKKIKEKEKAVAQEEQRGLQNSVDMTTSVLVTQPLESLNTGATPRVRACSASSFQSKYANRTEFSSNGDQEKIDNKGGETGNKVMVVVDPSFEAKGALEWALSHTVQSQDTVVLVHVARPNRESSESAGKFNLKAYQLLLDMKSMCELKRPGVVVNVVMLEGEEKGAAIVQEAKQQRVSLLVVGQKKRSILWGLMRRWTRRRRRAGVVEYCIQNSPCMTIAVRRKNKKLGGYLITTKRHKNFWLLA. 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01293 414 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca12g01293 414 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Seca12g01293 414 Pfam Universal stress protein family 251 391 IPR006016 -
Seca12g01293 414 Coils Coil 122 145 - -
Seca12g01293 414 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca12g01293 414 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca12g01293 414 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca12g01293 414 CDD USP_Like 251 390 - -
Seca12g01293 414 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Seca12g01293 414 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Seca12g01293 414 Coils Coil 88 108 - -
Seca12g01293 414 Coils Coil 154 185 - -
Seca12g01293 414 Gene3D HUPs 249 399 IPR014729 -
Seca12g01293 414 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca12g01293 414 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca12g01293 414 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 250 394 - -
Seca12g01293 414 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca12g01293 414 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Seca12g01293 414 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g01293 414 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca12g01293 414 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 183 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01293 Seca-Chr12 12615283 12627908 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01293 1 204 MADS-box Gene Family AT1G26310 63.462 1.76e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca12g01293 Usp 7.8e-24 CL0039
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01293 K09264 - tpra:123884923 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01293 12 12615283 12627908 Seca12g01293 12 12615283 12627908 ECH