Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01287 ATGCAGGAAGGTGAACATAATGACAATGAGCGGAGAGAAAGCCATGAGAATTGTGAGGGAATGGGTAATTTATCTGAACATAAGGAAGATGAGAATGATGGAAATAAAAATGAGGGAAGCGAAAATGAATTGAGTGAACGCATTTGTATTGATAACTTCCAGGACATTGTTAAAAACAATCTTGTATCTAAAAGTCCTGAGCAGATTATGTTGAAGTATGATTTTGTGAGTCTTAATATGGCTTATGTGTTCTATAGTTGGTATGGGAGGTTTAACGGGTTTGCTGTCCGAAAAAGCAAGATAAGTTACAATTGTCGGAAGGAAGTTGTTGGTCGTGACTTTTTGTGCAACAAAGAGGGCAAACGGAGAAAACGAAATGATGATAGTGATTCAGAAGAAGAGCTCGAACGAGAGCCTAAACCGCTTACTAGGTGTGAGTGTAAAGCTAAATTTCGTGTGCATGTGGACTTTAATTCACATCGGTGGTATGTGACGTGTTTTGACAATAGACATAATCATGAGCTGCTGGATGAAAAGTTTTTGGGTATGCTGCCAGCTCATAGAAATATGAGTGAAGGGGATATTATAGAGATGAATAATATGTTAAAGGCTGGTATAGGGGCTCCACAAATTTACAATTCATTTGCAAGCCAAGCAGGAGGGTATGAGAAGGTTGGTTTTTGGAAGAAAGACATGTACAACGAAATTGATAAACAAAGGAAGTTACGAAATGGTGATGCCATGGCTGCATTAGAATATCTAGGAGGTTTAGGGAAGAAGGATAAGAAATTGTTTTGTCGGTACACAATTGATGAAGAAGGAAGGCTTGAGCACTTATTCTGGTCTGATGGATATAGTCAGATGGACTATAGCATATTTGGTGATGTTGTAGCATTTGATGCTACCTATGGTAAGAACAAGTATCGTTGCCCTCTTGTAATTTTTTCTGGTCTTAATCATCATAGTAAGTCAATTGTGTTTGCCACTGCTATCATTGCAAATGAAACAGAAGCAACCTATGTATGGCTTCTTGAGAAATTTCTAGATGCAATGAAAGGTAGTGCACCTACATCGGTGATCACTGATGGTGATCTTGCAATGAAGAATGCTATTAAAAGGGTTTTTCCTAAGACTCACCACAGATTGTGTGCTTGGCACCTGATACGTAATGCCACTTCAAACATTTCAAATCCCACTTTCACTCATTTGTTCAAGAAATGCATGCTAGGTGATATTGAAATTCGTGACTTTCAACGAAAGTGGAGTGATATGGTGAAAAAGTGTAATGTGGAGGAGCATCGATGGGTCATTGAGATGTATGAACGGAGGAAAATGTGGGCCACATGCTACATTCGGGGGAACTTTTTTGCAGGATTTAGGACCACGTCACGGTGCGAGGGTCTACATTCTGAAGTTGGGAAGTTCATTAATTCACGATTGAGTTTGTGTGAGTTCTTGCAACATTACTATTGTTGTTTGACTCACATGCGTTACAAGGAAGTGCAAGATGACTTCAAATCAGTGCATGGTGAGCCTGTTGTGCGTACTAGTTTTGCTTCACTTGAGAAGTCTGCTAGTAAAGTTTATACCAGGGAAGTGTTTCGTCTTTTTCGTTCTGTGTTGGAGAGGGCAGCCCATGTGAAAGTTGTTCGGTGGAAAGAAAAGTTCCCATGCTTCATTTACACTGTTTCGAAGTATAGAAAAGTAGGGAGGGAGTGGAACGTGACATTCTACCCTGCTGAAAGTGTTTACAAATGTTCTTGTATGAGAATGGAATCAATTGGGCTTCCATGTGACCATATAATTGGGGTTTTGGTTTACCAAGATATTTCAGAATTACCTAGACCCTTAGTACTTGATAGATGGTCAAAGGATGCAAAGCTGGGACTTCGTGGTATGAACGGTAATGGATTTAATTTCTGTGACCCTCAATTGACAGCTAGATATTGGGCTTTGATGCACAGGTTTAGGGATGTGGCACGTGAAGCTTATGAAAATTTGGAAGATTACCATGATGCAGATGAGAATGCCATTAGTTTCCTTGCCCAGCTGAAAGAAAAAAAGGCAAGGAGGAGTGGTGGAGATGCATCTGTCGTGGTTAATGAAAATAACAATGTGGGGGATCCTTTACGGGCTAGAACAAAAGGAGCAGGTGGTGGAAGGTCAACACAAGCAGGGACGAGAAGGAGGCGTCCCCATCATTGTCGTAAATGCAAAGTTGCAGGGCACAATATTAAGACTTGCCCTTTACTGCGACCATCAAGTTCCCAACCAGTACGTGCAACAAGAGGTGCTTCCATAGATGGTGATAATGCAGAAGAAGTCATAGGGGATGCGGAAAATAACATGGACACAAGTGACATGTATTGGTCACCTATAGGTGACAACTACTGA 2394 0.4073 MQEGEHNDNERRESHENCEGMGNLSEHKEDENDGNKNEGSENELSERICIDNFQDIVKNNLVSKSPEQIMLKYDFVSLNMAYVFYSWYGRFNGFAVRKSKISYNCRKEVVGRDFLCNKEGKRRKRNDDSDSEEELEREPKPLTRCECKAKFRVHVDFNSHRWYVTCFDNRHNHELLDEKFLGMLPAHRNMSEGDIIEMNNMLKAGIGAPQIYNSFASQAGGYEKVGFWKKDMYNEIDKQRKLRNGDAMAALEYLGGLGKKDKKLFCRYTIDEEGRLEHLFWSDGYSQMDYSIFGDVVAFDATYGKNKYRCPLVIFSGLNHHSKSIVFATAIIANETEATYVWLLEKFLDAMKGSAPTSVITDGDLAMKNAIKRVFPKTHHRLCAWHLIRNATSNISNPTFTHLFKKCMLGDIEIRDFQRKWSDMVKKCNVEEHRWVIEMYERRKMWATCYIRGNFFAGFRTTSRCEGLHSEVGKFINSRLSLCEFLQHYYCCLTHMRYKEVQDDFKSVHGEPVVRTSFASLEKSASKVYTREVFRLFRSVLERAAHVKVVRWKEKFPCFIYTVSKYRKVGREWNVTFYPAESVYKCSCMRMESIGLPCDHIIGVLVYQDISELPRPLVLDRWSKDAKLGLRGMNGNGFNFCDPQLTARYWALMHRFRDVAREAYENLEDYHDADENAISFLAQLKEKKARRSGGDASVVVNENNNVGDPLRARTKGAGGGRSTQAGTRRRRPHHCRKCKVAGHNIKTCPLLRPSSSQPVRATRGASIDGDNAEEVIGDAENNMDTSDMYWSPIGDNY. 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01287 797 SMART 26again6 584 611 IPR006564 GO:0008270
Seca12g01287 797 MobiDBLite consensus disorder prediction 1 42 - -
Seca12g01287 797 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 72 675 IPR031052 GO:0006355
Seca12g01287 797 ProSiteProfiles Zinc finger SWIM-type profile. 561 609 IPR007527 GO:0008270
Seca12g01287 797 Pfam FAR1 DNA-binding domain 84 176 IPR004330 -
Seca12g01287 797 Pfam MULE transposase domain 296 390 IPR018289 -
Seca12g01287 797 MobiDBLite consensus disorder prediction 698 735 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01287 Seca-Chr12 12592994 12595468 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g01287 MULE 2.8e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01287 - - tpra:123913749 756.133