Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01282 ATGCAGGAAATACATTCCATCGGAGGCGGAGGCAGGTTTTTCGGCGGAGACAGGAGGCTCAGACCTCACCACCAACAGAACCACCAGAACCACCAAGCCCTCAAATGTCCACGTTGTGACTCTCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCTCAGCCTCGTCACTTCTGCAAGAACTGTCGTCGTTACTGGACCAAAGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGTGGTTGCCGCAAATCCAAGCGCTCCAACAAGCCTAAGAACTCCACTTCCTCTGAACCCGCCGCACCACCGACGACAGCTCCGTCGGAGCCGGAGCACAAGTCCAACTCTCATTCTAGCAGCGAGAGCTCCAGCCTCACCGCCGCAACGGAGGCAGTGTCTGCGCCGACGTTGAACACTGACTCCAACAACAACAACATGCACGAGTCGAAGCTGTTGATCTCTTCAAACGCTGGTTTGGAAACGGGAAGTACTGCGCTGGAACAAGGAACAGGGGACTGTGGTATTTTCTCTGAGATTGGGAACTTCACCAGCTTGATCGCTTCCACCAACGAGGCATTGCCGTTTGGGTTCGGTAACGGTATCCCTGATGCGTCGTCGTTTCATTGGCAGCACCACAAGGTCACCAACAACATGAGTGAAGAATTCAAGTTACCGGAGAATCTCGGTGGTGCTGGGTCCTTGCTCGATCACACCGTTGATTTGTCAAGCCTGCAAAGTAAAACTGGAAACGGTGGATTTGGACCGTTGGATTGGCATAGCGGTACGGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAGGCTTACTGGAGTCACACTCATTGGTCTGATCAGGACAATTCTACTCTCTTTCATCTTCCCTGA 891 0.5264 MQEIHSIGGGGRFFGGDRRLRPHHQQNHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKNSTSSEPAAPPTTAPSEPEHKSNSHSSSESSSLTAATEAVSAPTLNTDSNNNNMHESKLLISSNAGLETGSTALEQGTGDCGIFSEIGNFTSLIASTNEALPFGFGNGIPDASSFHWQHHKVTNNMSEEFKLPENLGGAGSLLDHTVDLSSLQSKTGNGGFGPLDWHSGTDQGLFDLPNTVDQAYWSHTHWSDQDNSTLFHLP. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01282 296 MobiDBLite consensus disorder prediction 1 33 - -
Seca12g01282 296 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Seca12g01282 296 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Seca12g01282 296 MobiDBLite consensus disorder prediction 78 147 - -
Seca12g01282 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 200 IPR045174 GO:0003700|GO:0006355
Seca12g01282 296 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Seca12g01282 296 MobiDBLite consensus disorder prediction 93 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01282 Seca-Chr12 12545963 12546853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01282 17 296 C2C2-Dof Transcription Factor Family AT5G60850 46.075 9.52e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca12g01282 zf-Dof 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01282 - - gmx:778097 357.066