Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01278 ATGGAGCTTTCTCAAGCGCATCCATGTGGAAGGGAAGGGAGGAAACCGACGCACGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTTCTCAAGGAAGTTGCCTCAAGACCCAAGATTTCTTACAACCACTAGATCGGGTAGAAACGAAAGCTAATGCCAAGGAAGAAGCCACAGAAGAAATATCATCGGTGGTTCAAAAGCCACCACCTTTAGCAGCACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGTATTAGCCACATTTCCTATTTCAATAATAATCACAGGATTCCAAAACCAGAGACATCCCTTTTCACTGTGCATCAAACAACTAGTGCGGATAGAAATGATGACAACTCCAACTGCAGTTCATATACTTCAAGCGGTTTTACTTTGTGGGAAGAGTCTGCGATAAAAAAGGGAAAGACAGGAAAGGAGAATAATGTAGGCGAGAAACCCACGGTAGGAGAGTCTGTGGCAAAGGGGCAGTGGACATTGACAGAGCGAACATCACAGTCGTTTTCTAACAATCGTCACAGCAGCTTCAACTCCCACTCTTCATCTCAGACAATTGGACAGAAGAACCAGAGTTTTATTGAAATGATGAAGTCTGCAAAGGATTGTACCCAGGATGAAGAGCTAGAAAACGAAGAAACCTTTTTTCTTAAGAAAGAATCCTCAAATACCCCGAGAGAAGAACTGAGGGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACACCAAGATCAAAACATTCTGCAACAGAGCAGCGGAGAAGAAGCAAAATTAATGACAGGCAAGTCTTACCTACCATGCTTATAGAAGTTTTTCTGATGCTACGAGAGCTTATCCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCATTTTTTACAAGAGAAGGTGCATAAATATGAAGGTTCATTCCAAGGGTGGAATAACGAGCCAGAAAAATTGATTCCATGGAGAAATAATGACAGGCCAGTAGAAAATTTCCAATCTCGTGGCACAAATAGTGGGACAAGTCCATCTCCAACATTGCTGTTTGCCTCGAAGGTTGATGAGAAAAATATCACCATCTCCCCAACAATACCTGGAAGTACCCAAAATGTAGAATCTGGCTTGAGCACAGCAACTAACTTCAAGACAATGGATCATCAGTCTGGAATAATGAACAAGGCTTTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTCCAACTCAAATCGGTAGCCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATTGGCATCTGATGCAGAGAACACCATATATCAACCTTCAGTGGATTCTCAGACTAAAACTGCTGCCAGTGAAAAGCTGAAAGAGAAAGACCTCACTATTGAAGGTGGTGCTATTAGCATATCAAGTTATATTAAAGTAAGTTTATTATGCCTGGACAGGTTGTTGGATACACTTACACATGCCTTGCAGAGTTCGGGGGTGGATTTGTCACAGGCTAACATTTCAGTGCAAATTGAACTTGGTAAGCAAGCAAGCATCAGACCAACGGTACCAATGTCAATGTGTAATGATGGGGTTCCTTCTAACAATCAAAGGATGATGCGCTCTAGAGGTGCTGGTTCTGAGAAGTCTGATCAAGCAGTAAAGAAGCTAAAGACGTGCAGAAGTTAA 1734 0.425 MELSQAHPCGREGRKPTHDFLSLYSNSTAQQDPRPPSSQGSCLKTQDFLQPLDRVETKANAKEEATEEISSVVQKPPPLAAPASVEHLLPGGIGTYSISHISYFNNNHRIPKPETSLFTVHQTTSADRNDDNSNCSSYTSSGFTLWEESAIKKGKTGKENNVGEKPTVGESVAKGQWTLTERTSQSFSNNRHSSFNSHSSSQTIGQKNQSFIEMMKSAKDCTQDEELENEETFFLKKESSNTPREELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRQVLPTMLIEVFLMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLIPWRNNDRPVENFQSRGTNSGTSPSPTLLFASKVDEKNITISPTIPGSTQNVESGLSTATNFKTMDHQSGIMNKAFPIPISSQPNFFTPTQIGSPGGVVSQLTHRLASDAENTIYQPSVDSQTKTAASEKLKEKDLTIEGGAISISSYIKVSLLCLDRLLDTLTHALQSSGVDLSQANISVQIELGKQASIRPTVPMSMCNDGVPSNNQRMMRSRGAGSEKSDQAVKKLKTCRS. 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01278 577 MobiDBLite consensus disorder prediction 154 205 - -
Seca12g01278 577 Pfam Helix-loop-helix DNA-binding domain 264 323 IPR011598 GO:0046983
Seca12g01278 577 MobiDBLite consensus disorder prediction 559 577 - -
Seca12g01278 577 CDD bHLH_AtBIM_like 261 347 - -
Seca12g01278 577 MobiDBLite consensus disorder prediction 1 41 - -
Seca12g01278 577 MobiDBLite consensus disorder prediction 233 279 - -
Seca12g01278 577 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 12 574 IPR044295 GO:0003700|GO:0006351|GO:0046983
Seca12g01278 577 MobiDBLite consensus disorder prediction 546 577 - -
Seca12g01278 577 SMART finulus 268 328 IPR011598 GO:0046983
Seca12g01278 577 Gene3D - 260 343 IPR036638 GO:0046983
Seca12g01278 577 MobiDBLite consensus disorder prediction 20 41 - -
Seca12g01278 577 MobiDBLite consensus disorder prediction 173 205 - -
Seca12g01278 577 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 342 IPR036638 GO:0046983
Seca12g01278 577 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 322 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01278 Seca-Chr12 12464118 12471522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01278 1 533 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 47.842 1.06e-117 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca12g01278 HLH 4.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01278 - - gmx:100808016 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01278 12 12464118 12471522 Seca12g01278 12 12464118 12471522 ECH