Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01276 ATGTCGGGGACGTCGCCGTCGGCTTCCCCAAAGAAGCGCCTCAAGTCCCAAATGGAAGAAGAAGATGGTGTTTGTTGCGGGATTTGCTATGCTGAGCGTGGGGTTTCGATCGCGGGGGAGATTGATTGCTGTAACCACTATTTTTGCTTCGTTTGCATCATGGAATGGGCCAAGCATGAGTCTCGTTGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGTAGGCCCCCTAAGCATGGCGTCTTTTCTTCCTCAAGGGACGTTAAGGTCCCTCTTCGTGACCAGGTTTACCATCCTTATGGAAATATGTCAACCGGTCCTGTTGAGTCTTCTGCTGAAGTCAAATGCAGTATCTGTCATGTTGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATGATGCTTCACATACATACTGCGTTGGCCTGGGATATACTGTACCTGAAGGTGATTGGTTTTGTCATGATTGTGCTATTTCCCGGGAGACCAATACCAATGAAGAATCAGACCTCGTGCCAACAGCTGAGCCGAGTGTAACCGTCTTTGATATTGTGAGGGAACCAAACAGCCGGGTGGTTAGAAGACCAAGGGAATCTCCTTTACAACAAAATCAGCCATCTACTTTACAACAAAATCAGTCATCTCCTTCTGTTATTCCTTTGCCTGATAGGGTGAGTAGACTCAAAGGTAAAACTCCTATGTCAGGTGTCGAAAATGCCCAACGTAATATACAGGCGCTCCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTACAGTTCCATTGCAATTCGTTCAAATCTGGTGGCTCAGGTAGTCAAAAACAAGATTCTAGCTCCTTATCACGTGGGAAATTGGATAATTCACATCCAATGGCTTCCACAAGCCTTCAACAATCCACTGTCCAAGGTGGTCATTCTAGTAATATGTTGAGTGATGGAGGTTTGGAAGATGTTGAGAAGGCTTGGAAAATGATGGACAGGGCAAAGATGATGCGACAGACTCATCAAAGAACTAGCAGGATTCCACAAGGAATGGATAATCCCTCATGTAGTGGAGCTAGAGAAAAATCAATTGCACAACATAATTACCCAGAATTGAAAAATCAACGGCCCGGAAAATTAGACTTGCGCACTAGAATGAAGAAGCAGTGTGACTACTCTAGTCTCAACAAGAATATGGAAAACCAGTGGTCTCTGAAGTTGGGAGAGAAAAAGCAAAGTAGGGCCACGTGTGAGGAGATGATACAACATGTAAGGGACCATACTACTCATTCAGAAGGATATTGTGAACGTGCATTGCCCAGAAAGGCCCATATTAGTATCCAGGGTGTTCCCTGTCGTGAAGATGGAGGGATAAATGTTTCTAAGGAACAAAGGCAGTCTGCTTGCTTGGCAACTTCAATAGGTTCAGCTCCCTCTAGTAGTAAATTTGGTAGTGTGTTCCCCTCTAATAAAGATGTGGATATTTTCAATAAAGAAAAGAGGTTGGCTAAAAGCTTTGGAGATGGGAACACAAGAAAAATTGAAGATGCAAAGTCCGAGATCCAGTCTCTTGTTAAACTGAATCTGAAGTTGTTAACCAGAGATAAACGGTTAGGTGTCGAAACCTTCAAGGCAGTTGCAAGGCAGGCCACCCATACCATCTTGGCTGCTTGCAGTTCCAAGCAGCAAAACTCCTCAAGCTCAGTATGCAGCCATAGTGACCATACTCCGCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGTCAACAATGCTTTTCTGTCTTTGTAAACAGTGTTGTCAATTCCATCCTGTTGGAGAAAGTGGGTTGTGCTTAA 1830 0.4404 MSGTSPSASPKKRLKSQMEEEDGVCCGICYAERGVSIAGEIDCCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRPPKHGVFSSSRDVKVPLRDQVYHPYGNMSTGPVESSAEVKCSICHVGTDEHLLLLCDLCDDASHTYCVGLGYTVPEGDWFCHDCAISRETNTNEESDLVPTAEPSVTVFDIVREPNSRVVRRPRESPLQQNQPSTLQQNQSSPSVIPLPDRVSRLKGKTPMSGVENAQRNIQALRENWNALRSGSLQFHCNSFKSGGSGSQKQDSSSLSRGKLDNSHPMASTSLQQSTVQGGHSSNMLSDGGLEDVEKAWKMMDRAKMMRQTHQRTSRIPQGMDNPSCSGAREKSIAQHNYPELKNQRPGKLDLRTRMKKQCDYSSLNKNMENQWSLKLGEKKQSRATCEEMIQHVRDHTTHSEGYCERALPRKAHISIQGVPCREDGGINVSKEQRQSACLATSIGSAPSSSKFGSVFPSNKDVDIFNKEKRLAKSFGDGNTRKIEDAKSEIQSLVKLNLKLLTRDKRLGVETFKAVARQATHTILAACSSKQQNSSSSVCSHSDHTPQFQKSTLMPNCCQQCFSVFVNSVVNSILLEKVGCA. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01276 609 MobiDBLite consensus disorder prediction 191 240 - -
Seca12g01276 609 MobiDBLite consensus disorder prediction 267 316 - -
Seca12g01276 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 89 IPR013083 -
Seca12g01276 609 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Seca12g01276 609 MobiDBLite consensus disorder prediction 335 356 - -
Seca12g01276 609 MobiDBLite consensus disorder prediction 198 222 - -
Seca12g01276 609 PANTHER F18C1.6 PROTEIN 15 606 - -
Seca12g01276 609 Coils Coil 239 259 - -
Seca12g01276 609 MobiDBLite consensus disorder prediction 267 312 - -
Seca12g01276 609 SMART ring_2 26 66 IPR001841 -
Seca12g01276 609 SUPERFAMILY RING/U-box 15 78 - -
Seca12g01276 609 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 181 IPR013083 -
Seca12g01276 609 SUPERFAMILY FYVE/PHD zinc finger 105 164 IPR011011 -
Seca12g01276 609 SMART PHD_3 115 160 IPR001965 -
Seca12g01276 609 Pfam PHD-finger 116 160 IPR019787 -
Seca12g01276 609 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Seca12g01276 609 ProSiteProfiles Zinc finger PHD-type profile. 113 162 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01276 Seca-Chr12 12437423 12441905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01276 116 163 C2H2 Transcription Factor Family AT3G01460 40.816 1.39e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca12g01276 PHD 4.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01276 - - gmx:100808541 815.839
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01276 12 12437423 12441905 Seca12g01276 12 12437423 12441905 ECH