Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g01276 | ATGTCGGGGACGTCGCCGTCGGCTTCCCCAAAGAAGCGCCTCAAGTCCCAAATGGAAGAAGAAGATGGTGTTTGTTGCGGGATTTGCTATGCTGAGCGTGGGGTTTCGATCGCGGGGGAGATTGATTGCTGTAACCACTATTTTTGCTTCGTTTGCATCATGGAATGGGCCAAGCATGAGTCTCGTTGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGTAGGCCCCCTAAGCATGGCGTCTTTTCTTCCTCAAGGGACGTTAAGGTCCCTCTTCGTGACCAGGTTTACCATCCTTATGGAAATATGTCAACCGGTCCTGTTGAGTCTTCTGCTGAAGTCAAATGCAGTATCTGTCATGTTGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATGATGCTTCACATACATACTGCGTTGGCCTGGGATATACTGTACCTGAAGGTGATTGGTTTTGTCATGATTGTGCTATTTCCCGGGAGACCAATACCAATGAAGAATCAGACCTCGTGCCAACAGCTGAGCCGAGTGTAACCGTCTTTGATATTGTGAGGGAACCAAACAGCCGGGTGGTTAGAAGACCAAGGGAATCTCCTTTACAACAAAATCAGCCATCTACTTTACAACAAAATCAGTCATCTCCTTCTGTTATTCCTTTGCCTGATAGGGTGAGTAGACTCAAAGGTAAAACTCCTATGTCAGGTGTCGAAAATGCCCAACGTAATATACAGGCGCTCCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTACAGTTCCATTGCAATTCGTTCAAATCTGGTGGCTCAGGTAGTCAAAAACAAGATTCTAGCTCCTTATCACGTGGGAAATTGGATAATTCACATCCAATGGCTTCCACAAGCCTTCAACAATCCACTGTCCAAGGTGGTCATTCTAGTAATATGTTGAGTGATGGAGGTTTGGAAGATGTTGAGAAGGCTTGGAAAATGATGGACAGGGCAAAGATGATGCGACAGACTCATCAAAGAACTAGCAGGATTCCACAAGGAATGGATAATCCCTCATGTAGTGGAGCTAGAGAAAAATCAATTGCACAACATAATTACCCAGAATTGAAAAATCAACGGCCCGGAAAATTAGACTTGCGCACTAGAATGAAGAAGCAGTGTGACTACTCTAGTCTCAACAAGAATATGGAAAACCAGTGGTCTCTGAAGTTGGGAGAGAAAAAGCAAAGTAGGGCCACGTGTGAGGAGATGATACAACATGTAAGGGACCATACTACTCATTCAGAAGGATATTGTGAACGTGCATTGCCCAGAAAGGCCCATATTAGTATCCAGGGTGTTCCCTGTCGTGAAGATGGAGGGATAAATGTTTCTAAGGAACAAAGGCAGTCTGCTTGCTTGGCAACTTCAATAGGTTCAGCTCCCTCTAGTAGTAAATTTGGTAGTGTGTTCCCCTCTAATAAAGATGTGGATATTTTCAATAAAGAAAAGAGGTTGGCTAAAAGCTTTGGAGATGGGAACACAAGAAAAATTGAAGATGCAAAGTCCGAGATCCAGTCTCTTGTTAAACTGAATCTGAAGTTGTTAACCAGAGATAAACGGTTAGGTGTCGAAACCTTCAAGGCAGTTGCAAGGCAGGCCACCCATACCATCTTGGCTGCTTGCAGTTCCAAGCAGCAAAACTCCTCAAGCTCAGTATGCAGCCATAGTGACCATACTCCGCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGTCAACAATGCTTTTCTGTCTTTGTAAACAGTGTTGTCAATTCCATCCTGTTGGAGAAAGTGGGTTGTGCTTAA | 1830 | 0.4404 | MSGTSPSASPKKRLKSQMEEEDGVCCGICYAERGVSIAGEIDCCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRPPKHGVFSSSRDVKVPLRDQVYHPYGNMSTGPVESSAEVKCSICHVGTDEHLLLLCDLCDDASHTYCVGLGYTVPEGDWFCHDCAISRETNTNEESDLVPTAEPSVTVFDIVREPNSRVVRRPRESPLQQNQPSTLQQNQSSPSVIPLPDRVSRLKGKTPMSGVENAQRNIQALRENWNALRSGSLQFHCNSFKSGGSGSQKQDSSSLSRGKLDNSHPMASTSLQQSTVQGGHSSNMLSDGGLEDVEKAWKMMDRAKMMRQTHQRTSRIPQGMDNPSCSGAREKSIAQHNYPELKNQRPGKLDLRTRMKKQCDYSSLNKNMENQWSLKLGEKKQSRATCEEMIQHVRDHTTHSEGYCERALPRKAHISIQGVPCREDGGINVSKEQRQSACLATSIGSAPSSSKFGSVFPSNKDVDIFNKEKRLAKSFGDGNTRKIEDAKSEIQSLVKLNLKLLTRDKRLGVETFKAVARQATHTILAACSSKQQNSSSSVCSHSDHTPQFQKSTLMPNCCQQCFSVFVNSVVNSILLEKVGCA. | 610 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g01276 | 609 | MobiDBLite | consensus disorder prediction | 191 | 240 | - | - | |
Seca12g01276 | 609 | MobiDBLite | consensus disorder prediction | 267 | 316 | - | - | |
Seca12g01276 | 609 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 89 | IPR013083 | - | |
Seca12g01276 | 609 | ProSitePatterns | Zinc finger RING-type signature. | 44 | 53 | IPR017907 | - | |
Seca12g01276 | 609 | MobiDBLite | consensus disorder prediction | 335 | 356 | - | - | |
Seca12g01276 | 609 | MobiDBLite | consensus disorder prediction | 198 | 222 | - | - | |
Seca12g01276 | 609 | PANTHER | F18C1.6 PROTEIN | 15 | 606 | - | - | |
Seca12g01276 | 609 | Coils | Coil | 239 | 259 | - | - | |
Seca12g01276 | 609 | MobiDBLite | consensus disorder prediction | 267 | 312 | - | - | |
Seca12g01276 | 609 | SMART | ring_2 | 26 | 66 | IPR001841 | - | |
Seca12g01276 | 609 | SUPERFAMILY | RING/U-box | 15 | 78 | - | - | |
Seca12g01276 | 609 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 181 | IPR013083 | - | |
Seca12g01276 | 609 | SUPERFAMILY | FYVE/PHD zinc finger | 105 | 164 | IPR011011 | - | |
Seca12g01276 | 609 | SMART | PHD_3 | 115 | 160 | IPR001965 | - | |
Seca12g01276 | 609 | Pfam | PHD-finger | 116 | 160 | IPR019787 | - | |
Seca12g01276 | 609 | ProSiteProfiles | Zinc finger RING-type profile. | 26 | 67 | IPR001841 | - | |
Seca12g01276 | 609 | ProSiteProfiles | Zinc finger PHD-type profile. | 113 | 162 | IPR019787 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g01276 | Seca-Chr12 | 12437423 | 12441905 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g01276 | 116 | 163 | C2H2 Transcription Factor Family | AT3G01460 | 40.816 | 1.39e-07 | 53.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | PHD | Seca12g01276 | PHD | 4.3e-08 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g01276 | - | - | gmx:100808541 | 815.839 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca12g01276 | 12 | 12437423 | 12441905 | Seca12g01276 | 12 | 12437423 | 12441905 | ECH |