Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01272 ATGGCAGATGTCACCTACCTCCTTCACCACCACGAACCCGACGATGACCAAACCCTAATCCCCTTACCCTTCTGGTCCCCTCATCACGATTTCGATTTCTACTCTTCCGATCCCGAATTCCCTCCCAATTTCTCCCGCGAAAATCAGGTCAATTTCCTCATGGACCTTTTCCAACAGCGCGTCGAGCAATCCCAGGTCACCACCGATCCCGTCTCCCAATCCCTAAACGACTCCGTTTTCGACGGTTTAGAATTTGGTCTCGATTTAGGGTTCGCCCCCGACGACGCCGACGATTTCTTCATCAGCACTAGGGTTTCATTACCCGGATCCGAATCCGGTTTCGGATCAGACTCCGACGATGAAGACGCCAACACTGGGATCCTAGGGATCTGCATGCATTCCGACGAAGAGTATCACGAAAACGACGACGTTTCTACCATCCCTCTCTGTTGGGACTCGCTTCACTTGGAGGATAACAGGGAGAACAACAACTACGAGGACTTCGAGTGGGAGGAAGTGGACGGTCGCGTCGACGAGAGGGAGGTTCTCAGCATTTTCGATGACAGGTCAGTTTCCGTTTCTGTTTCTCCAATAATGACTGGAATGGAAGAAGAAGAAGAAGAAGAACAAGGAGAAGAAGTTAGCATTGTTAGGGTAGGTGGTGATTCTGGCACAAACCCAGATTTAGAGCAAGATGCAGAGCCTTATTTTGGGGACAATGATGATTACATTTACACTGCAGAGTATGAAATGATGTTAGGTCAATTTGGTCAATTTGGGGAGAATGATAACCCCTTAATTGGTAGGCCTCCTGCTTCTGTTTCCGTTGTTCAGAACCTTCCTTCGGTGGTTGTGACCCAAGAAGACGTGGACAAAAACAATGCACTCTGTGCGGTTTGCAAAGATGAGTTTGGTGTTGGGGAAGAAGTGAAACAGTTGCCATGTTCGCATCGATACCATGGTGATTGCATTGTGCCTTGGTTGGGAATTCGGAATACTTGCCCTGTTTGTCGCTATGAGTTCCCCACAGATGATGCTGATTACGAGCGTAGGAGGGTCCAGAGATCTTCCCGGAGCATGTAA 1083 0.4885 MADVTYLLHHHEPDDDQTLIPLPFWSPHHDFDFYSSDPEFPPNFSRENQVNFLMDLFQQRVEQSQVTTDPVSQSLNDSVFDGLEFGLDLGFAPDDADDFFISTRVSLPGSESGFGSDSDDEDANTGILGICMHSDEEYHENDDVSTIPLCWDSLHLEDNRENNNYEDFEWEEVDGRVDEREVLSIFDDRSVSVSVSPIMTGMEEEEEEEQGEEVSIVRVGGDSGTNPDLEQDAEPYFGDNDDYIYTAEYEMMLGQFGQFGENDNPLIGRPPASVSVVQNLPSVVVTQEDVDKNNALCAVCKDEFGVGEEVKQLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDADYERRRVQRSSRSM. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01272 360 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 344 IPR013083 -
Seca12g01272 360 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Seca12g01272 360 CDD RING-H2_RNF126-like 297 338 - -
Seca12g01272 360 SMART ring_2 297 337 IPR001841 -
Seca12g01272 360 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 190 342 - -
Seca12g01272 360 SUPERFAMILY RING/U-box 276 344 - -
Seca12g01272 360 FunFam E3 ubiquitin-protein ligase RING1-like 258 344 - -
Seca12g01272 360 Pfam Ring finger domain 297 338 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01272 Seca-Chr12 12414984 12416159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01272 8 344 C3H Transcription Factor Family AT5G60820 38.350 4.69e-55 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01272 - - pcin:129307991 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01272 12 12414984 12416159 Seca12g01272 12 12414984 12416159 ECH