Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01262 ATGGTTAACCAACTGTCTTCTATGTTGGAATTGAAACAACTCCAAGCAACAATCACCAAAGCAGGTTTTCAATCTCATGTTCCTTTCATCTCTAAGTTAATTTTGTTTTCAGCACTTTCTCCTAATGGAAACCTGTCCCATGCTGATTCTCTTTTCCAAGAATCTTCAATGGACAACTCCTTTGTTTGCAACACTATGATTCGAGCTTATGCCAAAAGTCCCTCCCCTCTTCAAGCTTTATATATTTACAATCAAATGCAAAACACCAACGTTGTCTCTGATCACTTCACCTTCAATTTTGTTCTCAAGGCCTGCTCTAGAGCTTACAGGTTCATACAAGAATGTCCCACATTTGATGAGCTTGCTATTGTTTCTAAAGTGCAAAATCTTGGTTCTCCAGACTTAGTAAGGAATGCTCAGCCTACCCAAGAAACATCTTGGAACCATAAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTTGACAATGCCAAAACAATGAAAGCCAAGAAGGACTTCTATTCTACCTCAGATGTTCTTCAAATATTTTGGCAGCTTTGTGCAGGACTAAAGCACATGCACAGTTTAGATCCTCCATATGCACATAATGATGTCAAACCTGGTAATGTTCTCATAACACATAGGAAAGGACAGCCGCCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTTCTGCCAGGAGGCAAATTACCTCCAGATCACAGGCACTCCAGTTGCAGGAATGGGCATCTGAACATTGCTCTGCTCCTTTCCAAGCTCCTGAGCTGTGGGATTGTCCAAGCCATACTGATATAGATGAGAGGACTGACATTTGGTCACTAGGATACACATTATATGCAATAATGTGA 879 0.4084 MVNQLSSMLELKQLQATITKAGFQSHVPFISKLILFSALSPNGNLSHADSLFQESSMDNSFVCNTMIRAYAKSPSPLQALYIYNQMQNTNVVSDHFTFNFVLKACSRAYRFIQECPTFDELAIVSKVQNLGSPDLVRNAQPTQETSWNHKAYLLFPVHLDGTLLDNAKTMKAKKDFYSTSDVLQIFWQLCAGLKHMHSLDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARSARRQITSRSQALQLQEWASEHCSAPFQAPELWDCPSHTDIDERTDIWSLGYTLYAIM. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01262 292 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 59 93 IPR002885 -
Seca12g01262 292 ProSiteProfiles Protein kinase domain profile. 52 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01262 292 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 142 292 - -
Seca12g01262 292 Gene3D Tetratricopeptide repeat domain 4 121 IPR011990 GO:0005515
Seca12g01262 292 NCBIfam pentatricopeptide repeat 62 94 IPR002885 -
Seca12g01262 292 Gene3D Transferase(Phosphotransferase) domain 1 159 292 - -
Seca12g01262 292 SMART serkin_6 97 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01262 292 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Seca12g01262 292 Pfam PPR repeat family 59 106 IPR002885 -
Seca12g01262 292 SUPERFAMILY Protein kinase-like (PK-like) 114 291 IPR011009 -
Seca12g01262 292 Pfam Protein kinase domain 117 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01262 Seca-Chr12 12314360 12318611 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01262 188 292 MAP Kinase Kinase Kinase AT1G49160 29.524 9.30e-07 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Seca12g01262 Pkinase 5.2e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01262 K08856 - gmx:100803659 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01262 12 12314360 12318611 Seca12g01262 12 12314360 12318611 ECH