Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01259 ATGGTTTCTCTTTCTCAGTTCTACTTGTCTGTCTCAGATGGGTACTGGTTGACATTTTGTATATCATGGCTGATGGCTGAGTTGATTGCAGCCAATTATTCAGCCATTTGTAATTTGATCAATTCTGTAAGAATAAGCTTTGTGCCACTGCAGCCTACCCAAGAAACATCTTGGCACAATGAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTTGACAATGCCAAAACAATGAAAGCCAAGAAGGAATCCTATACTACCTCAGATGTTCTTCAAATATTTCGGCAGCTTTGTGCAGGACTAAAGCACATGCACAGTTTAGATCCTCCATATGCACATAATGATGTCAAACCTGGTAATGTTCTCATAACACATAGGAAAGGACAGCCGCCTCTTGCCATACTGATGGATTTTGGCAGTGCTCGTCCTGCCAGGAGGCAAATTACCTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCATCTGAACATTGCTCTGCTCCTTTCCGAGCTCCTGAGCTGTGGGATTGTCCAAGCCATACTGATATAGATGAGAGGACTGACATTTGGTCACTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCATTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTGGCTATTGTAAATGCTCAGATCAAATGGCCAGCTGGACCTAAGCCTTCATATCCAGAAGCTCTTCATCAGTTTGTGTCATGGATGCTTCAGCCCCAGGCTGCTGTGCGGCCCCGAATAGACGATATCATTATCCATGTTGATAAGTTGATTGCAAAGTTCACTCATTGA 834 0.4353 MVSLSQFYLSVSDGYWLTFCISWLMAELIAANYSAICNLINSVRISFVPLQPTQETSWHNEAYLLFPVHLDGTLLDNAKTMKAKKESYTTSDVLQIFRQLCAGLKHMHSLDPPYAHNDVKPGNVLITHRKGQPPLAILMDFGSARPARRQITSRSEALQLQEWASEHCSAPFRAPELWDCPSHTDIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQIKWPAGPKPSYPEALHQFVSWMLQPQAAVRPRIDDIIIHVDKLIAKFTH. 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01259 277 ProSitePatterns Serine/Threonine protein kinases active-site signature. 114 126 IPR008271 GO:0004672|GO:0006468
Seca12g01259 277 SMART serkin_6 23 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01259 277 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 41 275 - -
Seca12g01259 277 SUPERFAMILY Protein kinase-like (PK-like) 57 267 IPR011009 -
Seca12g01259 277 Pfam Protein kinase domain 59 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01259 277 ProSiteProfiles Protein kinase domain profile. 1 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01259 277 Gene3D Transferase(Phosphotransferase) domain 1 26 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01259 Seca-Chr12 12292109 12295300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01259 59 267 EF-hand Containing Proteins AT4G04710 26.168 1.96e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NAK Seca12g01259 Pkinase 1.2e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01259 K08856 - gmx:100803659 444.121