Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01254 ATGGCACAAGATACTGTTTCTGGCATTGAATCGCCTCGGCGACGAAATGGTCTATTGCGAGATCAGGTCCAACTAGTTAAAAGAAAGGATTCTGATCGCTATGAAATTGTTCCAATCCAGGACACTTTGTCATTTGAGAAAGGATTCTTCATAGTTATCCGTGCATGCCAGTTGTTGGCTCAAAAGAATGATGGAATCATATTCGTAGGAGTTGCAGGTCCCTCTGGAGCAGGGAAAACTGTTTTCACTGAGAAGGTCCTCAACTTTATGCCAAGCGTCGCTGTCATAACAATGGACAATTATAATGATTCTAGTCGAATCATAGATGGCAACTTTGATGACCCCCGGTTGACGGATTATGATACCTTGCTTGAAAATATACAGGGTCTTAAAGAAGGGAAGCCTGTTCAGGTTCCAATATATGATTTCAAGTCTAGTTCTCGCATAGGTTACAGGACTGTTGAAGTTCCTAGCTCCCGTATCGTTATCATTGAAGGCATCTATGCCGTGAGTGAAAAATTAAGGCCTTTGCTTGATCTCCGTGTTTCTGTCACCGGTGGAGTTCATTTTGACCTTGTCAAGCGTGTTTTGCGGGACATTCAACGTGCTGGTCAAGAGCCTGAAGAAATAATTCATCAGATTTCTGAAACGGTATATCCCATGTATAAAGCTTTTATAGAGCCAGATCTCCAAACAGCACATATAAAAATTATTAACAAGTTCAATCCATTCTCTGGATTCCAGAATCCCACCTACATATTGAAGTCAGCAAGAGCTGTGACAGCAGATCAAATCAAGGCAGTTATTGCTGCAGAGCATACTGAATCCAAAGAGGAAACATATGACATATATCTTCTACCCCCTGGGGAAGACCCTGAAGCATGTCAATCATATTTGAGGATGAGAAACCGGGATGGAAAATACAATCTCATGTTTGAGGAATGGGTTACAGATAGTCCATTCATAATATCACCTAGAATTACTTTTGAGGTCAGTGTGCGCCTACTCGGAGGGCTGATGGCCTTGGGGTACACAATTGCAGCTATCCTGAAAAGAAGCAGCCATGTCTTTCATGATGATAAAGTGTCCATAAAAACTGATTGGCTAGAACAACTTAACCGCTTATACATTCAGGTGCAAGGGAAAGATAGAAACTATGTTAAATTTGTAGCAGAGAAACTGGGGTTGGATGGTTCCTATGTTCCTCGCACGTACATTGAACAAATCCAGCTAGAAAAGCTCGTAAATGATGTAATGGCACTGCCAGATGATCTAAAGACAAAACTCAGCATAGATGATGATATGGTTTCAAGTCCCAAAGAAGCCCTTTCCAGAGCTTCTGCTGATAGGAGAATGAAATATCTTAATCGTGGTATTTCACACTCATATTCAAATCAAAGGGACAAGATTCTTCCTAAGTTGACTAAACTTGCTATAAATAACAGAAGATTTGATGGGAGAGCTCTAGAATCACCTGCACCGATTGCTAACCAAGTAAGATATATTTGCCTTATGAAGTCATTCAAGGAGTATCATTTTGGCCACTTCATTCGTCGTTGTATCACCGGCTATCTTATTTTGTGGAACTTAGCTACCTACTGA 1602 0.4089 MAQDTVSGIESPRRRNGLLRDQVQLVKRKDSDRYEIVPIQDTLSFEKGFFIVIRACQLLAQKNDGIIFVGVAGPSGAGKTVFTEKVLNFMPSVAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIQGLKEGKPVQVPIYDFKSSSRIGYRTVEVPSSRIVIIEGIYAVSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFSGFQNPTYILKSARAVTADQIKAVIAAEHTESKEETYDIYLLPPGEDPEACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIAAILKRSSHVFHDDKVSIKTDWLEQLNRLYIQVQGKDRNYVKFVAEKLGLDGSYVPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDMVSSPKEALSRASADRRMKYLNRGISHSYSNQRDKILPKLTKLAINNRRFDGRALESPAPIANQVRYICLMKSFKEYHFGHFIRRCITGYLILWNLATY. 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01254 533 CDD UMPK_like 68 240 - -
Seca12g01254 533 PANTHER URIDINE KINASE 18 424 - -
Seca12g01254 533 Gene3D - 67 246 IPR027417 -
Seca12g01254 533 Pfam Phosphoribulokinase / Uridine kinase family 68 237 IPR006083 GO:0005524|GO:0016301
Seca12g01254 533 Gene3D - 255 414 - -
Seca12g01254 533 ProSiteProfiles CYTH domain profile. 249 411 IPR023577 -
Seca12g01254 533 PRINTS Uridine kinase signature 66 83 - -
Seca12g01254 533 PRINTS Uridine kinase signature 189 199 - -
Seca12g01254 533 PRINTS Uridine kinase signature 225 238 - -
Seca12g01254 533 PRINTS Uridine kinase signature 133 148 - -
Seca12g01254 533 Pfam CYTH domain 272 405 IPR023577 -
Seca12g01254 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 237 IPR027417 -
Seca12g01254 533 SUPERFAMILY CYTH-like phosphatases 261 408 IPR033469 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01254 Seca-Chr12 12249773 12258085 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01254 69 237 PRT Gene Family AT5G40870 28.090 1.34e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01254 K00876 - gmx:100803122 931.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01254 12 12249773 12258085 Seca12g01254 12 12249773 12258085 ECH