Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01243 ATGGAAAACATAGACACCTCAAAATTTCCACACCAATCTCAAAAACAAAACAAGAATCTCTCTTTGATGCCTCTTGAATATGATGAGAAGAGAGAAGGGAGTATTATGAAGATTCCAAAAATAACAAACAAGAGTCAGAAAAAGTTTCTAGGAGTGAGACAAAGGCCTTCAGGAAGATGGATTGCTGAGATCAAGGACTCTTCACAGAAACTAAGGCTGTGGTTAGGGACTTTTGACAGAGCAGAAGAGGCTGCCCTGGCTTATGACTGTGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACAAACTTTCCAAACCCAGGAATCATAAACACTCATGAGGAAGATTGCAGCATTTTGGGAAAGAATCCCAGGGCATACCAGATTCTTAAGCATGCAGTCATGAAGAACCATGCACTTCACTCATCATCTGTTTATTCCACCACAGTCATGCCTTGGAAAAATCAGAACATGAGAGATGAAGATCACACACTTGTTGAGGAAACTATAGTTTGCTTCATTCCTGAAGAAGGTACTGGGTGTAGTGGAATTTCATTTGGAAGTTCAAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTGCTTCTTCTCAGTGTCAAACATGA 630 0.4032 MENIDTSKFPHQSQKQNKNLSLMPLEYDEKREGSIMKIPKITNKSQKKFLGVRQRPSGRWIAEIKDSSQKLRLWLGTFDRAEEAALAYDCAARLLRGRNAKTNFPNPGIINTHEEDCSILGKNPRAYQILKHAVMKNHALHSSSVYSTTVMPWKNQNMRDEDHTLVEETIVCFIPEEGTGCSGISFGSSKVYSSVVVAPSFSASSQCQT. 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01243 209 Gene3D AP2/ERF domain 47 106 IPR036955 GO:0003700|GO:0006355
Seca12g01243 209 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Seca12g01243 209 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g01243 209 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Seca12g01243 209 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Seca12g01243 209 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Seca12g01243 209 Pfam AP2 domain 48 97 IPR001471 GO:0003700|GO:0006355
Seca12g01243 209 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Seca12g01243 209 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 19 135 - -
Seca12g01243 209 FunFam ethylene-responsive transcription factor RAP2-11 47 106 - -
Seca12g01243 209 CDD AP2 47 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01243 Seca-Chr12 12204879 12205508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01243 45 106 AP2-EREBP Transcription Factor Family AT5G19790 69.355 8.61e-26 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g01243 AP2 7.9e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01243 - K09286 gmx:100807374 308.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01243 12 12204879 12205508 Seca12g01243 12 12204879 12205508 ECH