Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01240 ATGGCTGGGGGAAGGAGGAGGAAGCACCACTTCAGCAGAATCCATGCATTCTCTTGTGGGAAAGCTTCTATGAAAGAGGAGCATTCACTTATAGGAGGCCCTGGATTTTCAAGGAAAGTCTATTGTAATGACCAAGAACGTGCTATGGCAAGTCTTTTGAATTATGGTGACAATTATGTTAGAACAACAAAGTATACATTGGCCACTTTCATTCCCAAGTCCTTGTTTGAGCAATTCAGGAGGGTTGCCAATTTTTACTTTTTAGTATGTGCAGTTTTGTCTTTCTTCCCTGTTGCTCCTTACTCAGCTGTCAGCAATGTTGTTCCTCTAGTGGTTGTGGTTGCTGCTACAATGGCCAAAGAGTTCATTGAGGATTTTAGAAGGAAAACTCAGGATATAGAGATGAATAACAGGAAGGTTAAAGTACATCAAGGAGGTGGTTTTTTTGACTATTCTAAATGGAGGGATTTGAAAGTTGGGGACATAGTGAAGGTGGAAAAAGATGAATTTTTTCCTGCTGATCTCATCTTACTTGCATCAAACTATGATGATGCAATTTGCTATGTTGAGACAATGAATCTTGATGGAGAAACAAATCTTAAACTGAAACAAGCATTGGAAGGAACTTCAAAGATGCAAGAAGACTCATATTTTGAAAATTTCAAGGCTGTCATTAGATGTGAAGATCCAAATGCAAATTTGTACACATTTGTAGGCAGTCTGGAGCTTGAGGATCAACAATTTCCTCTTGCACCACAGCAGCTACTTCTTAGAGACTCTAAGCTGAGGAACACAGATTTTATCTATGGTGTGGTAATCTTTACTGGTCATGATACAAAGGTTATGCAGAATGCAACAGATCCTCCATCCAAGAGAAGCAAAATTGAGAAAAGGATGGATAAGATTATCTACTGCCTCTTCTTTGTCCTAATTCTAGTTTCTTTCATTGGGTCCATATTCTTTGGAATTACAACAAAGAGGGACCTAAAAAATGGAAGAATGAAGAGATGGTACCTTAGACCAGATGACACCAAACTTTTCTATGATCCAGATAGAGCACCTCTTGCAGCAATTCTGCATTTCTTCACAGCACTCATGTTGTATAGTTACTTCATTCCAATTTCCTTATATGTCTCCATTGAAATTGTGAAGATTCTTCAAAGCATTTTCATAAACCAGGATGAGCACATGTATTATGAGGAAACTGACAAGCCAGCACATGCTCGCACATCAAATTTGAATGAAGAACTTGGCCAAGTTGAGACCATACTTTCAGATAAAACAGGAACTTTGACTTGCAATTCTATGGAATTTATCAAGTGTTCTATTGCTGGGACTGCTTATGGAAGAGGATTTACAGAAGTTGAGAGAGCTATATCTAAGAGAAGAGAATCACCTTTTAGTAACAAAACTACAAAGAATGCTGCATCAAAGTCATCCATTAAAGGGTTTAACTTTACAGATGAAAGGATCATGAATGGAAATTGGGTCAGAGAACCTAATGCTAAAGTAATCCAGAACTTCCTAAGGTTGTTGGCTGTATGCCATACTGCAATACCTGAAGTTGATGAAGGAACTGGCAAGGTTTCATATGAAGCTGAATCACCAGATGAAGCAGCTTTTGTGATTGCAGCCAGAGAACTTGGTTTTGAATTTTATGAAAGGACACATACAAATATTTCACTGCGTGAATCAGACCCCTCATCAGGCCAGAAAATTGAAAGGTCCTACAAACTTTTGAATATATTAGAGTTTAGCAGTGCAAGAAAGAGGATGTCTGTAATTGTAAGAGATGAAGAGGGGAAACTACTACTACTTAGCAAAGGCGCTGACAGTGTCATGTTTGAGAGACTTGCCAAGAATGGAAGGGAGTTTGAAGAGAAGACTAAGGAGCACATTGGTGAATATGCTGATTCTGGTTTAAGGACCTTGATACTTGCATATCGTGAACTCAGAGAGGAAGAGTACAATCAGTTTAATAAAGAGTTAACAGATGCCAAGAACTTAGTGAGTGCAGATCAGGAGGAGATTGTAGAGGGAATATTACAAAATATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTACAAGATGGGGTTCCTGAATGCATTGACAAACTAGCACAGGCTGGGATTAAACTATGGGTTTTGACTGGTGATAAAATGGAGACAGCAATTAATATTGGATTTGCTTGTAGTTTACTGAGACAAGGAATGAAACAAATTATAATTACCTCAGAAACTCCAGAAAACAAATCATTGGAGAAAATGGAGGACAAGTCTGCTGCTGAAGCGATTCTTCAGGCACTTAAGGCAAGCGTTCTTCAACAAATAAAGGATGCAAAGTCATTACTTTCTAGATCACATGAAACCTCTGAGGCATTAGCTCTGATCATTGATGGGAAGTCTCTTACTCATGCACTAGAAGATGATGTAAAGGACTTGTTTCTTGAACTTGCCATTGGCTGTGCATCTGTGATATGCTGTCGTTCATCTCCCAAGCAAAAAGCACTTGTTACAAGATTGGTTAAGTTAAGAACTGGTAGCACAACTCTAGCTATTGGAGATGGAGCAAATGATGTTGGAATGCTCCAAGAAGCTGACATTGGGATTGGTATCAGTGGTGTAGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATTGCCCAATTTCGCTATCTAGAGCGCTTACTTCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCATCAATGATCTGTTACTTCTTTTACAAGAATATCACCTTTGGCTTCACTCTATTCTTCTATGAGATGTATGCCTCATTCTCAGGGCAACCTGCATACAATGATTGGTTCATGTCATTTTATAATGTATTCTTCACTTCACTTCCTGTCATTGCTTTGGGAGTATTTGACCAAGATGTCTCTTCCAAATTATGTCTCAAGTTTCCATTATTATATCAAGAAGGTGTGCAAAACATCCTATTTAGCTGGAAAAGAATCCTAGGTTGGGCATTGAATGGAGTTTCAAGTGCTGCCATCATATTCTTCTTCTGCATTCGCGCTATGGAGCATCAAGCATTCCGAAAAGGAGGTGAAGTTGTTGGACTAGAAGTTCTTGGAGCCACCATGTACACTTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCTATCAGTTACTTCACTTACATACAACACATATTCATATGGGGAAGCATCATATTATGGTACATTTTCCTCATGGCATATGGAGCCATAGACCCTACAATCTCAACCACAGCTTATAAGGTCTTCATTGAAGCATTGGCACCAGCACCATCTTATTGGTTTGTGACATTGCTTGTTCTAATTGCTGCACTCATTCCATATTTTGCTTATGCTTCCATCCAAATGCGTTTCTTCCCTATGTATCATCAAATGATACAATGGATAAGAAAAGATGGACAAACAAATGATCCAGAGTATTGTGATGTGGTGAGACAGAGATCAATAAGACACACAACAGTTGGATTCACAGCTCGTTTAGAAGCTTCTAGACGTTATGAAGCATCCAAACGTTTTGATTTTTCTAAACGTTCTGAAGCTTCCATAGCATCATGA 3606 0.3885 MAGGRRRKHHFSRIHAFSCGKASMKEEHSLIGGPGFSRKVYCNDQERAMASLLNYGDNYVRTTKYTLATFIPKSLFEQFRRVANFYFLVCAVLSFFPVAPYSAVSNVVPLVVVVAATMAKEFIEDFRRKTQDIEMNNRKVKVHQGGGFFDYSKWRDLKVGDIVKVEKDEFFPADLILLASNYDDAICYVETMNLDGETNLKLKQALEGTSKMQEDSYFENFKAVIRCEDPNANLYTFVGSLELEDQQFPLAPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNATDPPSKRSKIEKRMDKIIYCLFFVLILVSFIGSIFFGITTKRDLKNGRMKRWYLRPDDTKLFYDPDRAPLAAILHFFTALMLYSYFIPISLYVSIEIVKILQSIFINQDEHMYYEETDKPAHARTSNLNEELGQVETILSDKTGTLTCNSMEFIKCSIAGTAYGRGFTEVERAISKRRESPFSNKTTKNAASKSSIKGFNFTDERIMNGNWVREPNAKVIQNFLRLLAVCHTAIPEVDEGTGKVSYEAESPDEAAFVIAARELGFEFYERTHTNISLRESDPSSGQKIERSYKLLNILEFSSARKRMSVIVRDEEGKLLLLSKGADSVMFERLAKNGREFEEKTKEHIGEYADSGLRTLILAYRELREEEYNQFNKELTDAKNLVSADQEEIVEGILQNIEKDLILLGATAVEDKLQDGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIITSETPENKSLEKMEDKSAAEAILQALKASVLQQIKDAKSLLSRSHETSEALALIIDGKSLTHALEDDVKDLFLELAIGCASVICCRSSPKQKALVTRLVKLRTGSTTLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNITFGFTLFFYEMYASFSGQPAYNDWFMSFYNVFFTSLPVIALGVFDQDVSSKLCLKFPLLYQEGVQNILFSWKRILGWALNGVSSAAIIFFFCIRAMEHQAFRKGGEVVGLEVLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGSIILWYIFLMAYGAIDPTISTTAYKVFIEALAPAPSYWFVTLLVLIAALIPYFAYASIQMRFFPMYHQMIQWIRKDGQTNDPEYCDVVRQRSIRHTTVGFTARLEASRRYEASKRFDFSKRSEASIAS. 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01240 1201 FunFam Phospholipid-transporting ATPase 692 899 - -
Seca12g01240 1201 SUPERFAMILY Calcium ATPase, transduction domain A 139 285 IPR008250 -
Seca12g01240 1201 PRINTS P-type cation-transporting ATPase superfamily signature 859 878 - -
Seca12g01240 1201 PRINTS P-type cation-transporting ATPase superfamily signature 424 438 - -
Seca12g01240 1201 PRINTS P-type cation-transporting ATPase superfamily signature 742 752 - -
Seca12g01240 1201 NCBIfam HAD-IC family P-type ATPase 825 941 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g01240 1201 FunFam Phospholipid-transporting ATPase 116 286 - -
Seca12g01240 1201 Pfam Cation transport ATPase (P-type) 527 618 - -
Seca12g01240 1201 SUPERFAMILY HAD-like 419 914 IPR036412 -
Seca12g01240 1201 Gene3D - 556 667 IPR023299 GO:0000166
Seca12g01240 1201 SFLD p-type atpase 406 910 IPR044492 -
Seca12g01240 1201 FunFam Phospholipid-transporting ATPase 534 692 - -
Seca12g01240 1201 Pfam Phospholipid-translocating P-type ATPase C-terminal 887 1137 IPR032630 -
Seca12g01240 1201 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 693 IPR023299 GO:0000166
Seca12g01240 1201 NCBIfam phospholipid-translocating P-type ATPase 55 1144 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca12g01240 1201 Gene3D - 688 899 IPR023214 -
Seca12g01240 1201 Pfam Phospholipid-translocating ATPase N-terminal 40 105 IPR032631 -
Seca12g01240 1201 Gene3D - 114 286 - -
Seca12g01240 1201 Coils Coil 649 676 - -
Seca12g01240 1201 CDD P-type_ATPase_APLT_Dnf-like 57 1019 - -
Seca12g01240 1201 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 29 1150 - -
Seca12g01240 1201 SUPERFAMILY Calcium ATPase, transmembrane domain M 45 1137 IPR023298 -
Seca12g01240 1201 SFLD C1.7: P-type atpase like 406 910 - -
Seca12g01240 1201 ProSitePatterns E1-E2 ATPases phosphorylation site. 426 432 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01240 Seca-Chr12 12165040 12171209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01240 10 1185 Primary Pumps ATPases AT3G25610 71.296 0.0 1789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01240 K01530 - gmx:100799312 2101.25