Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01237 ATGACAAAAATTATTAAAGAGATGTTGCCTCCAGATGTACGTGTTGCAAGAGATGCTCAAGATCTATTGATTGAGTGTTGTCATGTATTGAGGGCTCTAGAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCATATGAACAACACAAGCTGGAGACCATGCAGGACTCTTTAAGAGGTGGTGGTAAATGGAGCAATGGAGCTGAGATGACTGAGGAAGAAGCATTAGCAGAGCAGCAAAGGATGTTTGCTGAGGCACGTGCTAGGATGAATGGTGGGGCCATTGCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 336 0.4375 MTKIIKEMLPPDVRVARDAQDLLIECCHVLRALEVLGFGEYIEEVYAAYEQHKLETMQDSLRGGGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAIASKQPDADQSLDS. 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01237 111 PANTHER PROTEIN DR1 HOMOLOG 1 27 IPR044255 -
Seca12g01237 111 Gene3D Histone, subunit A 29 98 IPR009072 GO:0046982
Seca12g01237 111 Gene3D Histone, subunit A 1 28 IPR009072 GO:0046982
Seca12g01237 111 SUPERFAMILY Histone-fold 2 98 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01237 Seca-Chr12 12127751 12130907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01237 1 107 CCAAT-DR1 Transcription Factor Family AT5G23090 64.444 2.00e-53 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01237 K21751 - gmx:100807912 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01237 12 12127751 12130907 Seca12g01237 12 12127751 12130907 ECH