Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01234 ATGGCAGAACCAGAAGACAACCTTCAAGCCTCGACTATGGATGAAACCAAGAAGAAGAAGCAGAAGAAGAAGCGCGGCAAGAAAAGGTCTCGGGATATTGTTGAAGAAGAGCATGCAGAAGAAGAGGAGAATGGGAATAATACTGATAGAGATGGAGAATCCTTGAATAAGAAGAAGGAAGAGGAGGAGGTGGAAGGGGAAATTGAAGTGGAAGAGAAAAAGGTGAAGAACAATGCTGGCTCTGGAATTATGAGTAGTGAGTCTTTTGATTCTCTGGGATTGTCTGAACCTACTTATAAGGCCATTATGGACATGGGATTCCACCACATGACTCAGATTCAAGCGAGAGCAGTTCCACCACTTTTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTGATTCCTGCTGTGGAGCTGCTGTACAATGTTAAATTTACACCTCGTAATGGAGCTGGTGTCATTGTCATATGCCCAACTAGAGAGCTTGCAATTCAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTGCAACTAGAAAACTTGAAGCTGAACGAATTGCCAAAGGGTTAAATCTATTGGTAGCAACTCCTGGTCGACTTCTAGATCATCTTCAAAATACAAAGGGATTCATATATAAAAACTTGAAGTGCCTCATGATTGACGAAGCTGACAGGATATTGGAAGCCAACTTTGAGGATGAAATGAAGCAGATTATTAAGATCCTCCCAAAGAATAGGCAAACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAACAAGGTCACAAATGAAGGATTGCTGCAGGGTTATGTGGTTGTACCCTGTGCCAAGCGATTTATTGTTCTCTATTCCTTTTTGAAGAGGCATCAGTCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCTGACATTCTTAATCTCATTCATATGAATTGTTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGGACAACTACCTTCTTTGACTTCTGCAAAGCAGACAAGGGGATCTTACTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCCGTGGACTGGATTGTGCAATATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGGAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCAGTGAAGGAATATGCATATGATGAAAAGAAGGTGGCAAATGTGCAGTCTCACCTGGAGAATTTGGTAGCCAACAACTTTTATTTAAACAAGATGGCTAAAGAAGCTTATAGATCATACATATTAGCATACAATTCACATTCCATGAAGGATATATTCAATGTTCACCGCCTTGATTTGCAGGTACAGCTTTCAGAGTATATTATATTTTATAATTATCAGGCCGTTGCTGCTTCATTCTGTTTTTCAAACCCACCGAATGTGAGTGTGAACATAAAGAGCAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGACATGGAATCAGCCACAGCAATCCTTATGGAAGAGGAAATGCTGACGATGAGCGGCAGTTTGTGAGGCATTAG 1761 0.4134 MAEPEDNLQASTMDETKKKKQKKKRGKKRSRDIVEEEHAEEEENGNNTDRDGESLNKKKEEEEVEGEIEVEEKKVKNNAGSGIMSSESFDSLGLSEPTYKAIMDMGFHHMTQIQARAVPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGATRKLEAERIAKGLNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEDEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRNKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIHMNCSSIHGKQKQQTRTTTFFDFCKADKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVANNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDLQVQLSEYIIFYNYQAVAASFCFSNPPNVSVNIKSSSKQRKKMRKVDGSRHGISHSNPYGRGNADDERQFVRH. 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01234 586 CDD SF2_C_DEAD 308 438 - -
Seca12g01234 586 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 87 115 IPR014014 GO:0003724
Seca12g01234 586 MobiDBLite consensus disorder prediction 43 73 - -
Seca12g01234 586 Pfam DEAD/DEAH box helicase 111 282 IPR011545 GO:0003676|GO:0005524
Seca12g01234 586 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 159 449 IPR027417 -
Seca12g01234 586 Pfam Domain of unknown function (DUF4217) 469 515 IPR025313 -
Seca12g01234 586 SMART ultradead3 106 311 IPR014001 -
Seca12g01234 586 MobiDBLite consensus disorder prediction 1 73 - -
Seca12g01234 586 MobiDBLite consensus disorder prediction 546 586 - -
Seca12g01234 586 Gene3D - 308 528 IPR027417 -
Seca12g01234 586 CDD DEADc_DDX18 98 295 IPR044773 GO:0003724|GO:0005524
Seca12g01234 586 PANTHER RNA HELICASE 27 475 - -
Seca12g01234 586 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 239 247 IPR000629 -
Seca12g01234 586 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 320 467 IPR001650 -
Seca12g01234 586 SMART DUF4217_3 468 544 IPR025313 -
Seca12g01234 586 SMART helicmild6 347 428 IPR001650 -
Seca12g01234 586 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 118 293 IPR014001 -
Seca12g01234 586 FunFam RNA helicase 304 547 - -
Seca12g01234 586 Pfam Helicase conserved C-terminal domain 323 427 IPR001650 -
Seca12g01234 586 Gene3D - 65 299 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01234 Seca-Chr12 12106408 12113128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01234 70 447 Eukaryotic Initiation Factors Gene Family AT3G19760 28.906 1.79e-48 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01234 K13179 - gmx:100798885 972.615