Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g01234 | ATGGCAGAACCAGAAGACAACCTTCAAGCCTCGACTATGGATGAAACCAAGAAGAAGAAGCAGAAGAAGAAGCGCGGCAAGAAAAGGTCTCGGGATATTGTTGAAGAAGAGCATGCAGAAGAAGAGGAGAATGGGAATAATACTGATAGAGATGGAGAATCCTTGAATAAGAAGAAGGAAGAGGAGGAGGTGGAAGGGGAAATTGAAGTGGAAGAGAAAAAGGTGAAGAACAATGCTGGCTCTGGAATTATGAGTAGTGAGTCTTTTGATTCTCTGGGATTGTCTGAACCTACTTATAAGGCCATTATGGACATGGGATTCCACCACATGACTCAGATTCAAGCGAGAGCAGTTCCACCACTTTTGATTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTGATTCCTGCTGTGGAGCTGCTGTACAATGTTAAATTTACACCTCGTAATGGAGCTGGTGTCATTGTCATATGCCCAACTAGAGAGCTTGCAATTCAGACACATGCTGTGGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTGCAACTAGAAAACTTGAAGCTGAACGAATTGCCAAAGGGTTAAATCTATTGGTAGCAACTCCTGGTCGACTTCTAGATCATCTTCAAAATACAAAGGGATTCATATATAAAAACTTGAAGTGCCTCATGATTGACGAAGCTGACAGGATATTGGAAGCCAACTTTGAGGATGAAATGAAGCAGATTATTAAGATCCTCCCAAAGAATAGGCAAACAGCTTTATTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCTCGCTTGTCATTTCAGACAACTCCTATCTATATTGATGTAGATGATGGGAGAAACAAGGTCACAAATGAAGGATTGCTGCAGGGTTATGTGGTTGTACCCTGTGCCAAGCGATTTATTGTTCTCTATTCCTTTTTGAAGAGGCATCAGTCGAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCTGACATTCTTAATCTCATTCATATGAATTGTTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGGACAACTACCTTCTTTGACTTCTGCAAAGCAGACAAGGGGATCTTACTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGCCGTGGACTGGATTGTGCAATATGATCCACCTGATGAACCAAAGGAATATATCCACAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGGAATGCTTTGCTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCGCTATCTGAAGGCAGCTAAGGTCCCAGTGAAGGAATATGCATATGATGAAAAGAAGGTGGCAAATGTGCAGTCTCACCTGGAGAATTTGGTAGCCAACAACTTTTATTTAAACAAGATGGCTAAAGAAGCTTATAGATCATACATATTAGCATACAATTCACATTCCATGAAGGATATATTCAATGTTCACCGCCTTGATTTGCAGGTACAGCTTTCAGAGTATATTATATTTTATAATTATCAGGCCGTTGCTGCTTCATTCTGTTTTTCAAACCCACCGAATGTGAGTGTGAACATAAAGAGCAGCAGTAAGCAAAGGAAGAAAATGCGTAAAGTTGATGGAAGTAGACATGGAATCAGCCACAGCAATCCTTATGGAAGAGGAAATGCTGACGATGAGCGGCAGTTTGTGAGGCATTAG | 1761 | 0.4134 | MAEPEDNLQASTMDETKKKKQKKKRGKKRSRDIVEEEHAEEEENGNNTDRDGESLNKKKEEEEVEGEIEVEEKKVKNNAGSGIMSSESFDSLGLSEPTYKAIMDMGFHHMTQIQARAVPPLLIGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTPRNGAGVIVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGATRKLEAERIAKGLNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEDEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRNKVTNEGLLQGYVVVPCAKRFIVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIHMNCSSIHGKQKQQTRTTTFFDFCKADKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVANVQSHLENLVANNFYLNKMAKEAYRSYILAYNSHSMKDIFNVHRLDLQVQLSEYIIFYNYQAVAASFCFSNPPNVSVNIKSSSKQRKKMRKVDGSRHGISHSNPYGRGNADDERQFVRH. | 587 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g01234 | 586 | CDD | SF2_C_DEAD | 308 | 438 | - | - | |
Seca12g01234 | 586 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 87 | 115 | IPR014014 | GO:0003724 | |
Seca12g01234 | 586 | MobiDBLite | consensus disorder prediction | 43 | 73 | - | - | |
Seca12g01234 | 586 | Pfam | DEAD/DEAH box helicase | 111 | 282 | IPR011545 | GO:0003676|GO:0005524 | |
Seca12g01234 | 586 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 159 | 449 | IPR027417 | - | |
Seca12g01234 | 586 | Pfam | Domain of unknown function (DUF4217) | 469 | 515 | IPR025313 | - | |
Seca12g01234 | 586 | SMART | ultradead3 | 106 | 311 | IPR014001 | - | |
Seca12g01234 | 586 | MobiDBLite | consensus disorder prediction | 1 | 73 | - | - | |
Seca12g01234 | 586 | MobiDBLite | consensus disorder prediction | 546 | 586 | - | - | |
Seca12g01234 | 586 | Gene3D | - | 308 | 528 | IPR027417 | - | |
Seca12g01234 | 586 | CDD | DEADc_DDX18 | 98 | 295 | IPR044773 | GO:0003724|GO:0005524 | |
Seca12g01234 | 586 | PANTHER | RNA HELICASE | 27 | 475 | - | - | |
Seca12g01234 | 586 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 239 | 247 | IPR000629 | - | |
Seca12g01234 | 586 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 320 | 467 | IPR001650 | - | |
Seca12g01234 | 586 | SMART | DUF4217_3 | 468 | 544 | IPR025313 | - | |
Seca12g01234 | 586 | SMART | helicmild6 | 347 | 428 | IPR001650 | - | |
Seca12g01234 | 586 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 118 | 293 | IPR014001 | - | |
Seca12g01234 | 586 | FunFam | RNA helicase | 304 | 547 | - | - | |
Seca12g01234 | 586 | Pfam | Helicase conserved C-terminal domain | 323 | 427 | IPR001650 | - | |
Seca12g01234 | 586 | Gene3D | - | 65 | 299 | IPR027417 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g01234 | Seca-Chr12 | 12106408 | 12113128 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g01234 | 70 | 447 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 28.906 | 1.79e-48 | 172 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g01234 | K13179 | - | gmx:100798885 | 972.615 |