Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01211 ATGTTCCATGGCGTTGTCGCTCGTGGAAGGTTTTCACTACCTGCGCCATCAGCTCCACGTAATCGACATTGGGCACCGTGCCATGCCGTCGTTGCAACACCGTTGCTTATTGCATTTGAATTGCTCCTTTGTATATATCTCGAGAGCTTATATGCAGTCAATCTGAAGATTGTGTTCCTTCCCTTACTGACATTTGAAATCATTATTCTCATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGAAAGCATGAGTGATGAAGCAATATGGGAAACTCTTCCTCACTTTTGGATTGCAATCTCTATGGTGTTCTTCATAGCTGCTACAATCTTCACAATCCTAAAACTGAGTGGTGATGTAGGTGCTCTTGGCTGGTGGGACTTATTTATTAACTTTGCGTATGTTTCTCTGTCTTTAGCACTGCTAAAATGTATTTTGATAATTAGCTGTGTTTTCTTAGAATGTTGGCCTGAAAGTTTTATAAATTCCAGAGAAGCCAGTTCATCTTCTAGTGCAGTTAGATATCTTGACTGGAACAGTGGCTTAATGGTTTCTTCAGAGGAAAATCAACGTCAGGAGAGAATGTGTAGCCTGCAAGACATAGGAGGTCATTTCATGAAAGTACCGGTTATTGTATTCCAGATTCTTCTTTGTATGTATTTAGAGGGAACACCTGCTTGTGCTGTATATATACCTCTTCCAGTTATTTTCTCTCCCCTTTTCGTACTGCAAGGCACTGGTGTATTGTTATCTGTATCTAAATTTGTGGAGAAACTTGTGCTTCTACTACGAAGTGGAGCTGGTGGAGGAATATATTTTAGATTTTCTTCAAGAGCTCATGATTGCTTGGGGTTCTTGCACCATGGTTCTAGATTATTAGGTTGGTGGTCAATTGATGAAGGGAGTCTGGAAGAACAGGCACGATTGTACCATGAGGGAGCATCTGGGTATAATACGTTCTGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCTAAAAGGGATCTTGCCGAGGAGGTTTGGAGACTCCAGGCAGCACTTGGTGAGCAGACAGAAATTACAAAATACAGCCAACAGGAATATGAAAGACTTAAAAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAGTGTTGTATTGCTCCCATGCAGGCATCGTGTCCTTTGCAGCTCTTGCTCAGAGAAGTGTAAGAAGTGCCCAATTTGTCGTGACCCTATTGGGGAGCGCTTGCCCGTGTATGATGTTTAG 1269 0.4177 MFHGVVARGRFSLPAPSAPRNRHWAPCHAVVATPLLIAFELLLCIYLESLYAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEESMSDEAIWETLPHFWIAISMVFFIAATIFTILKLSGDVGALGWWDLFINFAYVSLSLALLKCILIISCVFLECWPESFINSREASSSSSAVRYLDWNSGLMVSSEENQRQERMCSLQDIGGHFMKVPVIVFQILLCMYLEGTPACAVYIPLPVIFSPLFVLQGTGVLLSVSKFVEKLVLLLRSGAGGGIYFRFSSRAHDCLGFLHHGSRLLGWWSIDEGSLEEQARLYHEGASGYNTFCGYPPEIVKKMPKRDLAEEVWRLQAALGEQTEITKYSQQEYERLKNEKVLCRICFEGEISVVLLPCRHRVLCSSCSEKCKKCPICRDPIGERLPVYDV. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01211 422 SMART ring_2 375 409 IPR001841 -
Seca12g01211 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 350 420 IPR013083 -
Seca12g01211 422 ProSiteProfiles Zinc finger RING-type profile. 375 410 IPR001841 -
Seca12g01211 422 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 422 - -
Seca12g01211 422 FunFam Kinesin-like protein KIN-7D, mitochondrial 352 420 - -
Seca12g01211 422 Pfam Transmembrane Fragile-X-F protein 1 247 IPR019396 -
Seca12g01211 422 Pfam Zinc finger, C3HC4 type (RING finger) 372 414 - -
Seca12g01211 422 SUPERFAMILY RING/U-box 367 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01211 Seca-Chr12 11868620 11877711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01211 2 422 C3H Transcription Factor Family AT1G73950 69.484 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01211 - - gmx:100791390 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01211 12 11868620 11877711 Seca12g01211 12 11868620 11877711 ECH