Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01208 ATGTCATCAAGTGGAACCATTTGGAGCTATGAAGAAGAAAAAGCATTTGAGAATGCCATCGCTATGCATTGGATTGATGAAGCCTCAAAAGAGCAATGGGAAAAGATTGCTTCAGCTGTCCCTAACAAAAGCATGGAAGAAGTGAAGCAACATTACCAGGTACTTGTAGAGGATGTAAGTGCAATTGAGGCAGGTCATATATCATTTCCAAACTATGTTGTAGAGGAAACTACATCTTCAAATAAGGATCTCCATGGCTCTTCCAAGTCTACAACTTCAGATAAGAGATCAAATTGTAATTATGGAAGTGGGTTTTCTGGATTAGGACATGACTCCACCACACATAGTGGTAAAGGAGGATTATCAAGGTCATCAGAACAAGAAAGGAGAAAAGGAATTCCATGGACAGAGGAGGAGCACAGGTTATTTTTACTTGGTCTAGACAAATTTGGAAAAGGAGATTGGAGAAGCATTTCAAGGAACTTTGTGATTTCTAGGACTCCAACTCAAGTGGCAAGTCATGCACAGAAGTACTTCATAAGATTGAATTCCATGAATAGAGACAGAAGGAGGTCTAGTATACATGATATTACAAGTGTAAACAATGGAGATGTGGCTAATAATCAGGCACCAATTACAGGACAGCATAGTAGCACAATCCCTTCAAGTACAATGGCTGTAGGACAATCACTGAAGCATAGAGTACATCAGCCCCATATACCAACTGGTTTAGGCATGTATGGAACACCAGTTGGGCATCCTGTGGCTGCTCCTCCTGGCCATATGGCATCTGCAGTTGGGACTCCAGTCATGCTTCCTCCTGGACCCCACCCTCATCCTCACCCCCATCCCCATCCCCATCCTCATCCACCTTATGTTGTCCCTCTTGCTTACCCAATGGCACCTCCAACAATGCACCAATAA 924 0.4297 MSSSGTIWSYEEEKAFENAIAMHWIDEASKEQWEKIASAVPNKSMEEVKQHYQVLVEDVSAIEAGHISFPNYVVEETTSSNKDLHGSSKSTTSDKRSNCNYGSGFSGLGHDSTTHSGKGGLSRSSEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNNGDVANNQAPITGQHSSTIPSSTMAVGQSLKHRVHQPHIPTGLGMYGTPVGHPVAAPPGHMASAVGTPVMLPPGPHPHPHPHPHPHPHPPYVVPLAYPMAPPTMHQ. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01208 307 PANTHER TRANSCRIPTION FACTOR KUA1 4 301 - -
Seca12g01208 307 ProSiteProfiles SANT domain profile. 3 52 IPR017884 -
Seca12g01208 307 CDD SANT 8 56 IPR001005 -
Seca12g01208 307 FunFam transcription factor MYB1R1 133 184 - -
Seca12g01208 307 CDD SANT 134 179 IPR001005 -
Seca12g01208 307 SMART sant 4 58 IPR001005 -
Seca12g01208 307 SMART sant 131 181 IPR001005 -
Seca12g01208 307 Gene3D - 1 69 - -
Seca12g01208 307 ProSiteProfiles Myb-like domain profile. 127 179 IPR001005 -
Seca12g01208 307 SUPERFAMILY Homeodomain-like 6 61 IPR009057 -
Seca12g01208 307 ProSiteProfiles Myb-like domain profile. 8 56 IPR001005 -
Seca12g01208 307 MobiDBLite consensus disorder prediction 78 133 - -
Seca12g01208 307 SUPERFAMILY Homeodomain-like 129 184 IPR009057 -
Seca12g01208 307 ProSiteProfiles SANT domain profile. 135 183 IPR017884 -
Seca12g01208 307 Pfam Myb-like DNA-binding domain 134 179 IPR001005 -
Seca12g01208 307 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Seca12g01208 307 MobiDBLite consensus disorder prediction 78 121 - -
Seca12g01208 307 FunFam Transcription factor SRM1 1 69 - -
Seca12g01208 307 Gene3D - 133 185 - -
Seca12g01208 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 181 IPR006447 GO:0003677
Seca12g01208 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 127 183 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01208 Seca-Chr12 11857237 11858881 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca12g01208 Myb_DNA-binding 8.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01208 - - gmx:778049 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01208 12 11857237 11858881 Seca12g01208 12 11857237 11858881 ECH