Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01189 ATGTGGAACTCGGCGGAGAACGCCTTCGCCAGATCGGCGTCGTTTAGGGAGGAAGGGGAAGATGAAGAGGCGCTGCGGTGGGCGGCGCTGGAGAGGCTCCCGACGTACAAGCGAGCGCGCAGGGGAATCTTCAAAAACCTCACCGGCGACATGAAAGAGATCGACGTCACCGATCTCCAGTCGCAGGAACAACGGCTTCTTCTGGAAAGGCTCGTTGACTTCGTCGATAACGATCCTGAGAGGTTCTTCCACCGTGTGAGAAGCCGATTCGACGCAGTAGATTTGGAGTTTCCGAAGATTGAAGTTCGATTTCAAAACTTGACTGTTGAGACTTTTGTACATGTTGGAAGCAGAGCCCTCCCTACCATTCCCAATTTCATTTGCAATATGACTGAGGCTCTTTTAAGACAGTTGCGGATATACAGAAGAAAGAGAAGCAAACTGACAATTCTCGCCGACATCAGTGGGATTATCAGGCCCTCAAGGCTAACGTTGTTACTGGGTCCGCCAAGCTCTGGAAAAACAACACTGCTATTAGCTCTTGCTGGTAGGCTAGGACCTGGTTTGCAGATGTCAGGGAACATTACGTACAATGGACATAATCTGAAAGAGTTTGTTCCTCAGAGAACATCTGCTTATGTCAGTCAACAGGATTGGCATGTGGCAGAGATGACCGTGAGGGAAACTCTCCAGTTTGCTGGTCGTTGCCAAGGCGCTGGATTTAAATTTGACATGTTGCTGGAACTTGCCAGAAGAGAAAAGAATGCTGGAATAAAACCTGATGAAGATCTTGATATATTCATGAAGTCATTAGCTCTCGGGGGACAGGAAACAAATCTCGTGGTGGAGTATATCATGAAGATATTAGGTTTGGACATATGTGGTGACACATTGGTAGGGGACGAAATGCTCAAGGGCATTTCAGGGGGACAAAAGAAGCGGCTTACAACAGGTGAATTACTAATTGGCCCAGCAAGAGTGCTGTTCATGGATGAGATATCAACTGGTCTTGATAGTTCAACTACTTATCAAATTATCCGATATCTTAAGCATTCAAACCGTGCACTTGATGCAACCACAATTATATCTCTTCTTCAACCTGCTCCCGAGACCTATGAATTGTTTGATGATGTTATTCTTTTGTCCGAGGGTCAGATTGTATATCAGGGCCCCCGTGAAGCGGCTCTTGATTTTTTCAAACTGATGGGATTCAGTTGTCCTGAGCGAAAGAATGTAGCAGATTTCTTACAAGAAGTTACGTCTAAGAAGGACCAAGAGCAGTACTGGTCCGTTCTTGACCGCCCTTACCGGTATATACCTGTTGGAAAGTTCGCTGAAGCATTTTCCTTGTATCGTGAGGGAAGGATTTTGTCTGAGGAACTAAATGTTCCTTTCGATAGACGCTACAATCATCCAGCAGCCTTGGCAACATGTAGCTATGGCGCGAAGAGGCTTGAACTTCTCAAGATTAATTACCAGTGGCAGAAGCTTCTCATGAAGCGGAATTCATTTATTTATGTTTTTAAATTTGTTCAGCTGCTTTTGGTTGCTTTAATTACAATGAGTGTTTTCTTCCGAACCACGATGCACCACAATACAATTGATGATGGAGGCTTATATCTTGGAGCACTGTACTTTTCTATGGTTATTATTCTTTTCAATGGTTTTACGGAGGTGTCAATGTTAGTTGCAAAGCTTCCAGTTCTTTACAAGCACAGAGACTTGCACTTCTATCCTAGCTGGGCATATACACTCCCTTCTTGGTTCCTTAGTATCCCAACTTCCCTCATGGAGGCTGGATGCTGGGTAGTGGTCTCATATTATACAAGTGGATATGACCCTGCAATTACTAGATTTTTTCGGCAGTTCTTGCTTTATTTCTTTCTGCACCAGATGTCTATTGGTCTGTTTCGCTTGATAGGATCTTTGGGTCGGAATATGATAGTAGCCAATACCTTTGGATCCTTTGCCATGTTGGTTGTAATGGCTCTTGGCGGATATATAATTTCGAGAGATCGCATACCAAGTTGGTGGATATGGGGTTTTTGGGTTTCTCCTTTGATGTATGCACAAAATTCAGCTTCTGTAAATGAGTTCCTTGGACATTCCTGGGATAAGCAAGCTGGAAATCAGACCGCCTATACATTGGGTAAGGCAGTATTAAAAGATCGGAGTTTGTATCCAGAGAGCTATTGGTATTGGATTGGTCTTGGTGCAATGGTTGGATACACAATTTTGTTCAACATTCTATTTACGATCTTCTTAGCTTACCTTAATCCCTTGGGAAGACAACAAGCTGTAGTTTCAAAGGATGAACTGCGAGAAAGAGAGAAGAGAAGAAAAGGTGAAAGTGTTGTTATTGAATTGAGAGAGTACTTGCAGCATTCGGCATCAAGCGGAAAGCATTTTAAGCAAAAAGGAATGGTTCTCCCATTTCAACCACTTTCCATGGCTTTCAGCAATATCAATTACTATGTGGAGGTCCCTTTGGAATTGAAACAACAAGGGATATCAGAAGACAGGCTACAGCTGCTTGTTAATGTTACTGGAGCTTTTAGGCCTGGTGTGTTGACTGCATTAGTTGGAGTGAGTGGTGCTGGGAAAACCACCTTGATGGATGTATTAGCTGGAAGAAAAACCGGTGGAGTCATAGAAGGAACCATATATATATCTGGTTATCCCAAAAGACAAGACACTTTTGCAAGAATTTCTGGTTACTGTGAGCAGACTGATGTTCATTCCCCTTGCTTGACTGTCTGGGAATCGTTACTGTTTTCTGCTTGGCTACGATTATCTTCAAATGTTGACTCAGAGACACAAAAGGCCTTCGTCGAGGAGATAATGGAGCTTGTGGAGCTGACTCCGTTAAGGGGAGCACTAGTGGGTCTACCTGGAATTGACGGTCTGTCAACAGAACAACGTAAAAGGTTGACTATAGCAGTGGAACTGGTTGCCAACCCTTCTATAGTCTTCATGGATGAGCCTACATCTGGATTGGATGCCCGGGCTGCAGCCATTGTGATGAGAACTGTGAGGAATATAGTAAATACTGGGCGAACAATTGTGTGCACGATCCATCAGCCTAGCATAGACATATTTGAATCCTTTGATGAGCTTCTGTTTATGAAGCGGGGAGGAGAGCTCATATATGCTGGTCCACTTGGCCCTAAATCCAGTGAGCTAATCAGCTATTTCGAGGCAATCGAAGGAGTTCCCAAGATCAGGTCTGGATATAACCCTGCTACATGGATGCTGGAGGTTACTTCTTCAGCAGAAGAAAACCGTCTGGGAGTGGACTTTGCAGAAATCTACCGAAGATCCAGTTTATATCAATATAACCAAGAGCTGGTCGAAAGCTTGAGCAAGCCAAGTAGTAGTTCAAAAGAACTGCATTTTCCAACCAAGTATTGTCGGTCATCTTTCGAGCAGTTCCTAACTTGTCTTTGGAAGCAAAATCTATCTTACTGGCGTAACCCGCAGTATACTGCTGTTCGCTTCTTCTACACTGTCATCATCTCACTGATGCTTGGGACGATATGCTGGAGATTTGGGGCTAAAAGGTCCTTTTCTCTTCATTTTTATTTTCTTTTAGTGATATTCAATTTCAAATAA 3612 0.4372 MWNSAENAFARSASFREEGEDEEALRWAALERLPTYKRARRGIFKNLTGDMKEIDVTDLQSQEQRLLLERLVDFVDNDPERFFHRVRSRFDAVDLEFPKIEVRFQNLTVETFVHVGSRALPTIPNFICNMTEALLRQLRIYRRKRSKLTILADISGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGPGLQMSGNITYNGHNLKEFVPQRTSAYVSQQDWHVAEMTVRETLQFAGRCQGAGFKFDMLLELARREKNAGIKPDEDLDIFMKSLALGGQETNLVVEYIMKILGLDICGDTLVGDEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSNRALDATTIISLLQPAPETYELFDDVILLSEGQIVYQGPREAALDFFKLMGFSCPERKNVADFLQEVTSKKDQEQYWSVLDRPYRYIPVGKFAEAFSLYREGRILSEELNVPFDRRYNHPAALATCSYGAKRLELLKINYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLMEAGCWVVVSYYTSGYDPAITRFFRQFLLYFFLHQMSIGLFRLIGSLGRNMIVANTFGSFAMLVVMALGGYIISRDRIPSWWIWGFWVSPLMYAQNSASVNEFLGHSWDKQAGNQTAYTLGKAVLKDRSLYPESYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELREREKRRKGESVVIELREYLQHSASSGKHFKQKGMVLPFQPLSMAFSNINYYVEVPLELKQQGISEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGTIYISGYPKRQDTFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSNVDSETQKAFVEEIMELVELTPLRGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFEAIEGVPKIRSGYNPATWMLEVTSSAEENRLGVDFAEIYRRSSLYQYNQELVESLSKPSSSSKELHFPTKYCRSSFEQFLTCLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGAKRSFSLHFYFLLVIFNFK. 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01189 1203 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 135 408 IPR003439 GO:0005524
Seca12g01189 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 146 408 IPR027417 -
Seca12g01189 1203 FunFam ABC transporter G family member 34 138 442 - -
Seca12g01189 1203 Pfam Plant PDR ABC transporter associated 704 768 IPR013581 -
Seca12g01189 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 830 1053 IPR027417 -
Seca12g01189 1203 Pfam ABC-2 type transporter 489 699 IPR013525 GO:0016020|GO:0140359
Seca12g01189 1203 Pfam ABC-2 type transporter 1142 1202 IPR013525 GO:0016020|GO:0140359
Seca12g01189 1203 Pfam ABC transporter 152 333 IPR003439 GO:0005524
Seca12g01189 1203 FunFam ABC transporter G family member 34 831 1063 - -
Seca12g01189 1203 CDD ABCG_PDR_domain2 814 1052 IPR034003 -
Seca12g01189 1203 Pfam ABC-2 type transporter 366 419 IPR043926 GO:0140359
Seca12g01189 1203 Gene3D - 135 433 IPR027417 -
Seca12g01189 1203 Gene3D - 829 1060 IPR027417 -
Seca12g01189 1203 SMART AAA_5 160 385 IPR003593 GO:0016887
Seca12g01189 1203 SMART AAA_5 854 1046 IPR003593 GO:0016887
Seca12g01189 1203 PANTHER PLEIOTROPIC DRUG RESISTANCE PROTEIN 1-LIKE ISOFORM X1 4 1188 - -
Seca12g01189 1203 Pfam ABC-transporter N-terminal 76 126 IPR029481 -
Seca12g01189 1203 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 817 1070 IPR003439 GO:0005524
Seca12g01189 1203 Pfam ABC transporter 846 997 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01189 Seca-Chr12 11630282 11641503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01189 838 1029 Calmodulin-binding Proteins AT2G36910 25.510 8.61e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01189 K08711 - gmx:100815410 2218.74