Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01186 ATGTCTCAAGTCAAGTGGGAAGCCGATAAAATGCTAGATGTTTATATCTACAATCATTTGATGAAGAGACAATTACATGTTTCTGCAAGAGCATTTCAGGCTGAAGCAAATGTTCCAACGAATGCTGATATTATAGATGCACCTCAAGGTTTTCTCTTGGAGTGGTGGTCTGTCTTCTGGGACATATTCATTGCCAAGACCGGTCAGAATCAGTCAGAAGCAGCAACATTTTACCATCAGTACCAACTAAGTAAGGCGCAAATGGAAAAGCAACAAGATCCAATGCAGGAGCAGTTCTTATTGCAAGGGCATGCTCAACAGCAGCAATGTAGGGGTGGAACTCAACTTGTTAGTGGCAGTGCTAGACGTCCTCCTATTAACAAAGAACCTTTGATGAGGCAGACCAGGGCAACTATCAATGCTGTGGCAACAAAAAAGTATGAGGACAGGTTGAAGCTTCCACTCCAGAGAGATGCTTTAGATGATGTGGCCATTATGCAAAATGAAGCTGATAATGTTGGTCAGCTTCTGGACCCGAATTATGCCGCATTGTTGAAAGCAATAGGAGCAGCAACAACTAGTGGACAAGCTCTAGGACAAACACTGCTCAGTGCTCCTATCATTTTACCGGAGTATCTTCAACAAGTCCAAAATCAGAACCAGCAACTTCCAGGGTCTACACAAGACATAAAGAGTGATATGAATGTAATGATGAGGTCCCAAGCTGTTGTTCCAGAAGGATCCTTTATCGGCGTTCATGGTTCAAATCAAGGCAGTAGCAATTTGACTCTGAATGGATGGCCTTTAGCAGCACAGGATCAGCTTCCCTCAGGACTTCTCCAGCAGAATAATTTGATGCGGTCTTCACCATCTCCCAATCAACTTTCCCAACAGCTGCAACTTATGCTTCAGGAACAACAGAATTTTGCTGCATTTGCCAGTGATTTAGCAGGCAGAAGACTCAGAGAGCTTCTTGATAATCAAAATATGGATCTTGGGAAAGATGGCCAATCAAATTCTATTGGTGATTTAATTCCTAATGCTAATACGGGAATGCCTGCACCTACTCAAGTTGGTTCCCCTGTATTGCCTCATCAAGACTCAGATATGCTCCTTAAGCAACAAGTTCAAAAGAATAGTCAGCAGGTTCAACAGTATTCACAGCGTCCTCTTGCAAGCCAGCAGTCGCAAAGTCTCCAGCAACAAGGAAAAACTAGTTCTGGAACTATGTCCATTGCCTTACAAGGAAATGACCAGGCTTCCAAAAGTCAAATCAAGAAAACGCGAAAGCGAAAGCCAGCATCATCTTCAGGTTCTGCAACTGCAAACACCACAAGACCATCCACCAGTTCACCTTCAACACCATCTACACAAACACCAGGAGTCGTGATGACTGAGCCAACTGTGCAACAGAAGGTTTCTTCCTCTAAGTCACTTGCATCAGCAAAGAATCAATTGGCTGATATGGACGACCTCGTGGGTGATTCATCTTTGGGTGACAATGTTGAGTCATCCTCATCTCCTGATGATGCAAGCCATAGAGGAACAGTTGGCAAAGGCGGATACCCATTTAAGGAGATCAAGCACATAAAGGCAAGTTCACATAAAGTTGAGTGTTGTCACTTCTCATCAGATGGAAAACTGTTTGTTACTGGTGGCCATGATAAAAAGGCTTCTTTGTGGTGCACAGAATCATTTAACCTGAAATCTTCACTTGAAGAGCACACTCAATGGATAACTGATGTTCGATTTTGTCCAAGTATGCCGCGTCTTGCCACATCTTCAGCTGACAAGACTGTTAGGGTTTGGGATGCTGATAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGCAACAACTGCGTTGTCACTAGATTTTCACCCTAGTAATGATGACCTTATTTGCTCTTGTGACAATAGTGAGATAAGATACTGGAGTATTAAGAATGGTAGTTGTGCTGGGGTTTTCAAGGGTGGTGTAAGTCAGATAAGATTTCAACCATGTCTTGGAAAGCTTCTTGCAGCCGCAGCAGATAATCTCATATCCATTCTTGACGTAGAAACCCTGGGTTGTAGCCTTAAATTGGAGGGCCATAATAACCTTGTCCGTTCTGTGTGCTGGGATTCTTCTGGAAAATATCTGGCATCTGTTAGTGATGATCTGGTTAGAGTCTGGACAGTTGGATCTGGTGGAGAAGGGCAATGCATTCGTGAGTTTAATGAATTTGGGATGAAATTCAACACCTGTGTTTTCCACCCCTTCTCTCCTATGCTGGTCATTGGCTGCCATAAGACTCTTGAGCTGTGGGACTTCATTGAAAACAAGACAGTGACTCTGAGTGCACATAACAAGCTTGTATCTTCCTTGGCAGTATCAAATATTACTGGGTTGGTGGCTTCAGCTAGTCATGACAAGTCTTTCAAGATCTGGAAGTGA 2439 0.433 MSQVKWEADKMLDVYIYNHLMKRQLHVSARAFQAEANVPTNADIIDAPQGFLLEWWSVFWDIFIAKTGQNQSEAATFYHQYQLSKAQMEKQQDPMQEQFLLQGHAQQQQCRGGTQLVSGSARRPPINKEPLMRQTRATINAVATKKYEDRLKLPLQRDALDDVAIMQNEADNVGQLLDPNYAALLKAIGAATTSGQALGQTLLSAPIILPEYLQQVQNQNQQLPGSTQDIKSDMNVMMRSQAVVPEGSFIGVHGSNQGSSNLTLNGWPLAAQDQLPSGLLQQNNLMRSSPSPNQLSQQLQLMLQEQQNFAAFASDLAGRRLRELLDNQNMDLGKDGQSNSIGDLIPNANTGMPAPTQVGSPVLPHQDSDMLLKQQVQKNSQQVQQYSQRPLASQQSQSLQQQGKTSSGTMSIALQGNDQASKSQIKKTRKRKPASSSGSATANTTRPSTSSPSTPSTQTPGVVMTEPTVQQKVSSSKSLASAKNQLADMDDLVGDSSLGDNVESSSSPDDASHRGTVGKGGYPFKEIKHIKASSHKVECCHFSSDGKLFVTGGHDKKASLWCTESFNLKSSLEEHTQWITDVRFCPSMPRLATSSADKTVRVWDADNPGYSLRTFTGHATTALSLDFHPSNDDLICSCDNSEIRYWSIKNGSCAGVFKGGVSQIRFQPCLGKLLAAAADNLISILDVETLGCSLKLEGHNNLVRSVCWDSSGKYLASVSDDLVRVWTVGSGGEGQCIREFNEFGMKFNTCVFHPFSPMLVIGCHKTLELWDFIENKTVTLSAHNKLVSSLAVSNITGLVASASHDKSFKIWK. 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01186 812 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Seca12g01186 812 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 615 652 - -
Seca12g01186 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 530 561 IPR001680 GO:0005515
Seca12g01186 812 MobiDBLite consensus disorder prediction 370 422 - -
Seca12g01186 812 ProSitePatterns Trp-Asp (WD) repeats signature. 591 605 IPR019775 -
Seca12g01186 812 Gene3D - 658 812 IPR015943 GO:0005515
Seca12g01186 812 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 572 607 - -
Seca12g01186 812 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 780 812 - -
Seca12g01186 812 Pfam WD domain, G-beta repeat 527 561 IPR001680 GO:0005515
Seca12g01186 812 Pfam WD domain, G-beta repeat 569 604 IPR001680 GO:0005515
Seca12g01186 812 Pfam WD domain, G-beta repeat 776 812 IPR001680 GO:0005515
Seca12g01186 812 Pfam WD domain, G-beta repeat 692 726 IPR001680 GO:0005515
Seca12g01186 812 Pfam WD domain, G-beta repeat 611 647 IPR001680 GO:0005515
Seca12g01186 812 MobiDBLite consensus disorder prediction 498 512 - -
Seca12g01186 812 PANTHER TRANSCRIPTION ACTIVATOR MSS11 80 812 - -
Seca12g01186 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 780 812 IPR001680 GO:0005515
Seca12g01186 812 MobiDBLite consensus disorder prediction 331 356 - -
Seca12g01186 812 MobiDBLite consensus disorder prediction 434 483 - -
Seca12g01186 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 572 607 IPR001680 GO:0005515
Seca12g01186 812 SMART Lish 8 40 IPR006594 GO:0005515
Seca12g01186 812 Gene3D - 522 657 IPR015943 GO:0005515
Seca12g01186 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 615 656 IPR001680 GO:0005515
Seca12g01186 812 SMART WD40_4 733 771 IPR001680 GO:0005515
Seca12g01186 812 SMART WD40_4 689 727 IPR001680 GO:0005515
Seca12g01186 812 SMART WD40_4 608 647 IPR001680 GO:0005515
Seca12g01186 812 SMART WD40_4 650 686 IPR001680 GO:0005515
Seca12g01186 812 SMART WD40_4 773 812 IPR001680 GO:0005515
Seca12g01186 812 SMART WD40_4 565 604 IPR001680 GO:0005515
Seca12g01186 812 SMART WD40_4 523 562 IPR001680 GO:0005515
Seca12g01186 812 ProSiteProfiles Trp-Asp (WD) repeats profile. 696 728 IPR001680 GO:0005515
Seca12g01186 812 MobiDBLite consensus disorder prediction 330 521 - -
Seca12g01186 812 SUPERFAMILY WD40 repeat-like 523 812 IPR036322 GO:0005515
Seca12g01186 812 CDD WD40 526 812 - -
Seca12g01186 812 Pfam LisH 10 36 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01186 Seca-Chr12 11611299 11619859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01186 610 811 Miscellaneous Gene Families AT5G08390 24.402 2.20e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Seca12g01186 WD40 0.012 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01186 - - gmx:100801265 991.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01186 12 11611299 11619859 Seca12g01186 12 11611299 11619859 ECH