Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01183 ATGCCACATTCTTCTCTGATCTTCATTTATTCCGATTCCATAAACACATACCCAATGGCGTTGGTTATTCTCGTTTTCTTCCATTTGTTTCTTCAACTGAGTGTCCGAGTCAACTCGGAGCCAACTCAGGACAAGCAAGCCCTCCTTGCTTTCATCTCCCAAACCCCACACTCCAACCGTGTCCAATGGAATGCTTCAGATTCCGTCTGCAACTGGGTCGGTGTCCAATGTGACGATTCACGTTCCTATGTCTATTCCCTCCGTTTACCCGCTGTTGGTCTCGTGGGTCGGGTCCCACCCGGAACAATCGGAAAACTCACCCTGCTTCGTGTCCTCAGTCTCCGTTCCAATGGTCTCACCGGTGAGATCCCCTCTGATTTCTCCAATTTGACCTTCCTTCGCAGCCTCTACCTCCAGAAGAATCAGTTCTCCGGTGAGTTCCCACCTAGTCTAACTCGCCTGACTCGTTTGACTCGCTTGGATCTCTCCTCCAACAACTTCACCGGTTCAATCCCTTTCTCCATCAACAACTTGGTCCACCTCAGCGGTCTCTTCTTGGAGAACAACGCCTTCTCCGGTAGCCTCCCAAGCGTTACAGCCAAATTGGTTGGTTTCAATGTTTCCAATAATCACCTCAACGGTTCCATCCCCGAGACACTCTCCAAGTTCCCCGAATCCTCATTCGCCGGAAACTTAGATCTCTGCGGACCGCCGTTGAAATCGTGCAATCCTTTCTTCCCGGCGCCGGCGCCCTCACCGTCGTCCACTTCACCTGCGGGTACGACGCACAAGAAGTCGAATAAGCTCTCCACGGGTGCCATTATCGGAATCGTCGTGGGTTCTGTTGTGGGTTTGTTGTTACTGCTGCTTCTCCTGTTCCTCTGCCTCCGGAAGCGGCAGGGGCGGCAACCTGCAAAGCCTCCGAAGCCAGTTGCGACGGCGCGTGCAGCGCCGGCAGAGGCGGGAACGTCGTCGTCGAAGGACGATATCACGGGTGGGTCAGCAGAGGCAGAGAGGAACAAGCTGGTGTTCTTTGAAGGGGGAATATACAGCTTCGATTTGGAAGATTTGCTTCGTGCTTCGGCGGAGGTTTTAGGGAAGGGAAGCGTAGGGACTTCGTATAAGGCAGTGCTGGAAGAAGGTACGACGGTGGTGGTGAAGAGGTTGAAGGATGTTGTGGTTACGAAGAAGGAGTTCGAGATGCAAATGGAGGTTTTGGGTAAGATTAAGCATGAGAATGTGGTTCCTCTCAGAGCTTTTTACTTCTCCAAGGATGAGAAATTGCTCGTTTACGATTACATGTCCGCTGGTAGCTTATCTGCTTTGCTTCACGGGAGCAGAGGTTCTGGGCGAACGCCGCTAGATTGGGACAACCGGATGAGAATAGCACTAGGAACCGCAAGGGGGCTAGCATGCCTCCACGTGTCAGGCAAAGTGGTCCATGGCAATATCAAATCTTCCAACATCCTCCTCCGAGGGCCGGACCACGAGGCCTGCGTTTCGGACTTTGGCCTCAACCCGTTATTCGGAAACGGAGCCCCGTCTAACCGTGTTGCGGGTTATCGGGCACCCGAGATTGTGGAAACGCGTAAGGTCAGCTTTAAGTCTGACGTGTACAGCTTCGGTGTGTTGCTGTTGGAGCTATTAACAGGGAAAGCACCCAACCAAGCTTCTCTTGGGGAAGAGGGTATCGATCTTCCAAGGTGGGTCCAGTCCGTGGTTCGCGAAGAATGGACCGCGGAGGTGTTTGATGCTGAGCTCATGAGGTTTCATAACATAGAGGAGGAGATGGTTCAGTTATTGCAGATAGCGATGGCTTGTGTTTCGGTGGTGCCTGACCAGAGGCCTAACATGCAGGATGTGGTTCGCATGATTGAGGACATGAATAGAGGTGAGACGGATGAGGGTTTACGACAGTCGTCCGATGATCCTTCAAAAGGATCGGAGGGTCATACGCCACCTCCGGAGTCAAGGACTCCACCTAGATCGCTCACACCTTAA 2001 0.5262 MPHSSLIFIYSDSINTYPMALVILVFFHLFLQLSVRVNSEPTQDKQALLAFISQTPHSNRVQWNASDSVCNWVGVQCDDSRSYVYSLRLPAVGLVGRVPPGTIGKLTLLRVLSLRSNGLTGEIPSDFSNLTFLRSLYLQKNQFSGEFPPSLTRLTRLTRLDLSSNNFTGSIPFSINNLVHLSGLFLENNAFSGSLPSVTAKLVGFNVSNNHLNGSIPETLSKFPESSFAGNLDLCGPPLKSCNPFFPAPAPSPSSTSPAGTTHKKSNKLSTGAIIGIVVGSVVGLLLLLLLLFLCLRKRQGRQPAKPPKPVATARAAPAEAGTSSSKDDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFEMQMEVLGKIKHENVVPLRAFYFSKDEKLLVYDYMSAGSLSALLHGSRGSGRTPLDWDNRMRIALGTARGLACLHVSGKVVHGNIKSSNILLRGPDHEACVSDFGLNPLFGNGAPSNRVAGYRAPEIVETRKVSFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMACVSVVPDQRPNMQDVVRMIEDMNRGETDEGLRQSSDDPSKGSEGHTPPPESRTPPRSLTP. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01183 666 MobiDBLite consensus disorder prediction 627 645 - -
Seca12g01183 666 Pfam Protein kinase domain 362 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01183 666 SUPERFAMILY Protein kinase-like (PK-like) 363 625 IPR011009 -
Seca12g01183 666 Gene3D Ribonuclease Inhibitor 41 200 IPR032675 -
Seca12g01183 666 Pfam Leucine rich repeat N-terminal domain 42 78 IPR013210 -
Seca12g01183 666 MobiDBLite consensus disorder prediction 627 666 - -
Seca12g01183 666 Gene3D Ribonuclease Inhibitor 202 242 IPR032675 -
Seca12g01183 666 Gene3D Phosphorylase Kinase; domain 1 326 433 - -
Seca12g01183 666 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 434 639 - -
Seca12g01183 666 Gene3D Transferase(Phosphotransferase) domain 1 434 646 - -
Seca12g01183 666 CDD STKc_IRAK 365 628 - -
Seca12g01183 666 PANTHER OS05G0588300 PROTEIN 21 638 - -
Seca12g01183 666 MobiDBLite consensus disorder prediction 302 332 - -
Seca12g01183 666 ProSiteProfiles Protein kinase domain profile. 359 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01183 666 Pfam Leucine Rich Repeat 109 130 IPR001611 GO:0005515
Seca12g01183 666 SUPERFAMILY L domain-like 43 236 - -
Seca12g01183 666 FunFam pollen receptor-like kinase 1 328 433 - -
Seca12g01183 666 FunFam Probable inactive receptor kinase RLK902 41 199 - -
Seca12g01183 666 MobiDBLite consensus disorder prediction 246 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01183 Seca-Chr12 11555519 11558939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01183 44 646 Receptor kinase-like Gene Family AT5G58300 54.248 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca12g01183 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01183 - - gmx:100806857 996.882