Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01182 ATGGCTTCACCATCCGAACTAAGCCTTGATTGCAAGCCTCATAGCTATTCCATGTTACTCAAATCATTTGGAGATCAAAATCAAACTGATCAGAATCAGACCCACCACAAGCTTGAGGAGTTCCTTTCTCGCTTAGAGGAAGAACGTCTCAAGATTGATGCTTTCAAGCGTGAGCTTCCTCTCTGCATGCAACTTCTCACTAATGCCATGGAGGCTTCAAAGCAACAACTTCAGGCCTTTAGAGTGAACCAAAGCACAAGGCCAGTTTTGGAAGAATTCATACCAGTGAAGCATTTAACCTCTGAAAGCTCTGAGAAAACAACAAACATATCTGATAAGGCAAATTGGATGACATCTGCTCAATTATGGAGCCAAACAAGTGAAGGAACCAAACAACAATCCACAATCACATCACCTAAAGAAGCTGATATTGGATTCAGCATAAGCCCCAAGCTAGTCCTAGACAACAAACAGAGAAATGGTGGAGCCTTTCTTCCATTCTCAAAGGAAAGAAACTCCTCCTGCCAATTAGGCTCTACATTGAGGGGTCTCCCTGAGTTAGCCCTTGCCTCCGCAGAGAAAGAAATGGAAGACATTAAGAAACATGCAGAGGCAGAGAAGGGAGTAGTAGTCTCATGTCAGATTCAGAAGAAGGAGAATAATTCAAGCAATGATGGAGCATTAGTTGATCAAGGTAAAGGGAATAACAATCAAGTTGTGTCCAATGCTCAAACAACCACAACAACTACCAGTAATAGCACCACAACAAGCCAAACTCATAGGAAAGCAAGAAGGTGCTGGTCACCAGACTTGCACCGTAGATTTGTCAATGCCCTTCAAATGCTTGGTGGATCTCAAGTGGCAACTCCAAAACAAATAAGGGAATTGATGAAAGTTGATGGTTTGACCAATGATGAAGTTAAAAGCCATTTGCAGAAATATAGGCTTCACACAAGAAGGCCCAGCCCAAGCCCACAAACAGGTGCACCGGCGGCCCAGCTTGTGGTCCTAGGAGGAATCTGGGTCCCACCGGAATATGCTACAGCGGCAGCCCATACCGCCACCCCTGCCCTCTATGGCGCGCATCCTTCATCCCACGCGCCGCCGCCACACTACTGTGCTGCTCAAGAGTTCTACACTGCCGCGCAGACGCAGCCGCTGCTTCCGCCGCCTCCGGCGCACCACCACATGCATGTGTACAAGACGACGGCACATGGACAGAGCTCGCCGGAATCGGGCGGGGACAGGTCGGAGAGTATCGAGGATGGGAAATCGGAGAGTAGCAGCTGGAAGGGAGAGAGTGAAGGGGACAGAAAAGGGTTGGCTGGGGAGAGTAATGGGAGTGAGATCACTCTCAAATTCTAG 1365 0.4799 MASPSELSLDCKPHSYSMLLKSFGDQNQTDQNQTHHKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASKQQLQAFRVNQSTRPVLEEFIPVKHLTSESSEKTTNISDKANWMTSAQLWSQTSEGTKQQSTITSPKEADIGFSISPKLVLDNKQRNGGAFLPFSKERNSSCQLGSTLRGLPELALASAEKEMEDIKKHAEAEKGVVVSCQIQKKENNSSNDGALVDQGKGNNNQVVSNAQTTTTTTSNSTTTSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQTGAPAAQLVVLGGIWVPPEYATAAAHTATPALYGAHPSSHAPPPHYCAAQEFYTAAQTQPLLPPPPAHHHMHVYKTTAHGQSSPESGGDRSESIEDGKSESSSWKGESEGDRKGLAGESNGSEITLKF. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01182 454 SUPERFAMILY Homeodomain-like 259 320 IPR009057 -
Seca12g01182 454 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Seca12g01182 454 NCBIfam myb-like DNA-binding domain, SHAQKYF class 262 317 IPR006447 GO:0003677
Seca12g01182 454 FunFam Myb family transcription factor 261 319 - -
Seca12g01182 454 MobiDBLite consensus disorder prediction 242 264 - -
Seca12g01182 454 Gene3D - 261 319 - -
Seca12g01182 454 MobiDBLite consensus disorder prediction 402 454 - -
Seca12g01182 454 MobiDBLite consensus disorder prediction 242 262 - -
Seca12g01182 454 Coils Coil 63 83 - -
Seca12g01182 454 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 12 431 IPR044787 GO:0003700|GO:0006355
Seca12g01182 454 Coils Coil 189 209 - -
Seca12g01182 454 MobiDBLite consensus disorder prediction 415 442 - -
Seca12g01182 454 Coils Coil 38 58 - -
Seca12g01182 454 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01182 Seca-Chr12 11530159 11532642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01182 1 454 G2-like Transcription Factor Family AT2G03500 51.867 1.14e-137 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca12g01182 Myb_DNA-binding 9.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01182 - - gmx:100807925 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01182 12 11530159 11532642 Seca12g01182 12 11530159 11532642 ECH