Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01181 ATGACGATGGACGACGAGAGCTCCATATATGTTGGGGGTCTTCCCTACGACGCCACCGAAGATACAATTCGCACTGTCTTCAATTTGTATGGCGCCATCCTTGATGTCAAGATTATCAATGACCAACGCACTAGGGGCAAGTGCTATTGTTTTGTTACTTTCACAAATCCTAGGTCAGCAATCGATGCCATAAACGACATGAATGGCAGAACTATTGGTGGGCGTGTGGTTAAAGTTAATGGGGTGAGGACTCGTGGTGGTAGAACAAATTTTGGCAGAGAACGTTATTATGGTGAGAGGAATGGAGACTGGGATCGTGGCAGAGATCGAGAACATGATTATGATTATGATCATGATCATGATCATGATAGGGATGGATACAGAAATAGGAGCAGTGATAGGTCTCGGGACCGGGATAGGTCCAGAGACCGTGACCACGACAGGAATAGAAGAATTGAAAGTATACATGAGTATGATGAAGCTAGAGAACCTATATTAGATAATGATTGGAGTCAAGAGGATGACCGCGCTGAAAATGAACAAGAAAACACCAGGGCACATGGTGGAGATGTGGATAGAGAGCACAGCATTGATTTGGATACAGACAGGAAGATGGATAGGTTGAGTGATCCTGATAAAAGTTTTGATGAGCACAGAAAAGAACAGTCAAGGAGAATCAATGATTTGAATGCTACAAATCAACATAGCATGGGTCTTTCTTCAGATTCAAATGATAACCACGATGATCAGGTAGAAGATGAATTAGAGAGGTCAATGCAACAGCTTGATCAACTAAAAAAGGAGCAGGTTTCTCAATTGGAAGAGGGATTGGAAGAGAAAAGACTCCATGTTATGGAGTTACAAAAGCAATCTAAGAAACTGGAGGATGCACTGATCACTGCAAAGAAATATTCTTCACATCGTCAGATGCAGCTGACCAAGCTGCACAAATATTTTCTGCAAGTGAAAGATTGCACCGAAAGGCTTAAAACCAGTGAAAAAGAACTCCAGGCTCTAGTTGATACAGTGATGCTGGAGAGTGATGGTGATGGTGTTGGCCAACTTACAAATGGTAGTCTTGATGGTAGATAG 1092 0.424 MTMDDESSIYVGGLPYDATEDTIRTVFNLYGAILDVKIINDQRTRGKCYCFVTFTNPRSAIDAINDMNGRTIGGRVVKVNGVRTRGGRTNFGRERYYGERNGDWDRGRDREHDYDYDHDHDHDRDGYRNRSSDRSRDRDRSRDRDHDRNRRIESIHEYDEAREPILDNDWSQEDDRAENEQENTRAHGGDVDREHSIDLDTDRKMDRLSDPDKSFDEHRKEQSRRINDLNATNQHSMGLSSDSNDNHDDQVEDELERSMQQLDQLKKEQVSQLEEGLEEKRLHVMELQKQSKKLEDALITAKKYSSHRQMQLTKLHKYFLQVKDCTERLKTSEKELQALVDTVMLESDGDGVGQLTNGSLDGR. 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01181 363 Coils Coil 322 342 - -
Seca12g01181 363 MobiDBLite consensus disorder prediction 88 254 - -
Seca12g01181 363 MobiDBLite consensus disorder prediction 227 244 - -
Seca12g01181 363 CDD RRM_SF 9 80 - -
Seca12g01181 363 SUPERFAMILY RNA-binding domain, RBD 4 110 IPR035979 GO:0003676
Seca12g01181 363 SMART rrm1_1 8 80 IPR000504 GO:0003723
Seca12g01181 363 MobiDBLite consensus disorder prediction 88 226 - -
Seca12g01181 363 PANTHER GEO13361P1-RELATED 5 148 - -
Seca12g01181 363 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 2 195 - -
Seca12g01181 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 84 IPR000504 GO:0003723
Seca12g01181 363 Gene3D - 2 100 IPR012677 -
Seca12g01181 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Seca12g01181 363 Coils Coil 248 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01181 Seca-Chr12 11522829 11526519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01181 7 79 Eukaryotic Initiation Factors Gene Family AT1G71770 32.877 5.18e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01181 - - gmx:100816804 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01181 12 11522829 11526519 Seca12g01181 12 11522829 11526519 ECH