Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01180 ATGCAATCTTACAACCTATCCTGCCATGAACTTGGAGTAGGAACTATCCTGCAATTGAAAATGAAGGATCCAGTGGAGGATCAAGTGAAATCATCTAGGAGGGCTCTGCAGAAGTCCTCGGAGCTTAGAAGAAAGGGTAGTAGTAGTAGAAGAAGAAGCCAGTGTAAACAAGAGAAATTACAAGAAACAGGACTTGATTCACAACTGGGTTCATCTGCTTCTTGTAAAAGTCTTGTCTTTCCTGCAAGGCCTGGCTATGGCCAGCTTGGGACAAAGTGTTTGGTCAAAGCTAATCACTTCCTAGCAGATATATCAGCATCAGACTTGAGCCATTACACTGTTTTGATAACTCCTGAAGTTACTTCTCGTAAAACAAGCAAAGCTATCATAGCAGAGTTAGTGAGGCTTCACAGGAACACTGAGTTGGGGATGAGGCTTCCTGTATATGATGGTGGAAGAAATCTCTACACTGCTGGGTTGCTTCCTTTTGCATACAAAGAGTTCACCATACTATTGAGTGAGGATCATGAGGGTACTGGTGGTACCAGGGAAAGAGAATTTGAAGTGGTTATTAAGTTTGCAACTCGTGTTAGTATGCATCAATTACGTGAGCTTCTCAGTGGGAAACAAGTGGACACCCCACAAGAGGCTCTTACTGTCATTGACATTGTGTTGAGGGAGCTTGCGGCTCAGAGCTACGTATCAATTGGGAGGTTTCTCTATTCTCCAGATTTAAGGAAACCACAGCAGCTGAGTGGTGGCCTGGAATCATGGCGTGGTTTCTACCAGAGTATAAGGCCTACTCAAATGGGATTGTCCCTTAATATTGACATGTCATCGATGGCTTTTATAGAACCACTCCCTGTAATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGTACTCAAAGCCATTGTCAGATGCAGATCGTGTCAAGATTAAGAAAGCCTTAAGAGGTGTAAAAGTTGAAGTCACACATAGAGGAAGTTTTCGAAGGAAGTACAGGATATCAGGATTGACATCACAGCCCACAAGGGAGCTCAATTTCCCCCTGGATGAGAAAATGAACATGAAATCAGTAGTTGATTACTTTCAAGAAATGTATGGATATACAATCATATATACTCATCTACCCTGCCTTCAAGTAGGAAGCCAAAAGAAGGTGAACTATTTGCCCATGGAGGCATGCAAGATAGTTGGAGGTCAGAGATATACAAAAGGGCTTAACGAAAAGCAGATAACTTCTTTGCTGAAGGTATCATGCCAGAGACCACGTGAACAAGAGACAGATATTCTACAGACAATTCAACAAAATGATTATGAGTATAATCCCTATGCAAAGGAATTTGGAATCAGCATAGACAGCAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCAGCACCATGGTTGAAATATCACGACACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAACATGATGAACAAGAAAGTTATAAATGGAAGCACGGTGAGATATTGGGCATGTATCAATTTCTCTAGAAGTGTCCAAGAAAGTACAGCTCGTGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGGAATTCAGTCAGGACCCTGTGATTCCTGTATATTCATCAAGACCAGATATGGTCAAGAAGGCCTTGAAGTATGTACATTCTGCTTCTCTAGACAAACTTGGTGGAAAAGAGCTAGAGTTGCTGATTGCCATTCTTCCAGACAACAATGGCTCTCTGTATGGCGATCTCAAAAGAATCTGTGAAACAGATCTGGGGTTGATTTCCCAGTGCTGTCTTACAAAACACGTATTCAAGATTAATAGACAGTATTTGGCAAATGTGGCACTAAAGATCAATGTCAAGATGGGAGGAAGGAACACAGTACTTTTGGATGCTCTAAGTTGGAGGATCCCATTGGTTAGTGACATCCCAACAATAATTTTTGGAGCTGATGTAACTCATCCAGAATCTGGAGAGGACCCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCAGAAGTAACAAAGTATGCAGGATTGGTATGTGCTCAGCCTCATCGTGAAGAACTCATTCAAGATCTTTTCAAATGTTGGAAGGATCCTCATCATGGCATAGTTTATGGTGGCATGATCAGAGAGCTTTTACTCTCATTTAAGAAGGCAACTGGACAAAAACCATTGAGGATAATATTTTACAGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTCTTGCTATATGAGCTTGATGCTATCCGTAAGGCTTGTGCATCTTTGGAAACTAGTTACCAACCTCCAGTAACATTTGTTGTGGTTCAAAAACGGCATCACACTAGACTCTTTTCAAACAATCATGATGACAAAAACAGCACTGATAAGAGTGGGAATATCTTGCCTGAGAGTTTCCACCAAAGGGTACCGTGGTGGATTCAAAGATCTGTCATCCAACTGAATTTGACTTCTACTTGTGCAGTCATGCAGGAATTCAGCTATGCAAGATGTACACGATCTGTTTCTGTAGTGCCTCCTGCGTACTATGCTCATCTGGCAGCTTACAGAGCTAGATTCTACATGGAACCTGATGTCCGTGAAATTGCTAAATCCCGAGGTGGAAGATCAAAAAATGAGTCAGTTCGGCCACTACCAGCTCTCAAAGAGAAGGTGAAGAATGTAATGTTTTACTGCTGA 2721 0.4226 MQSYNLSCHELGVGTILQLKMKDPVEDQVKSSRRALQKSSELRRKGSSSRRRSQCKQEKLQETGLDSQLGSSASCKSLVFPARPGYGQLGTKCLVKANHFLADISASDLSHYTVLITPEVTSRKTSKAIIAELVRLHRNTELGMRLPVYDGGRNLYTAGLLPFAYKEFTILLSEDHEGTGGTREREFEVVIKFATRVSMHQLRELLSGKQVDTPQEALTVIDIVLRELAAQSYVSIGRFLYSPDLRKPQQLSGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVYSKPLSDADRVKIKKALRGVKVEVTHRGSFRRKYRISGLTSQPTRELNFPLDEKMNMKSVVDYFQEMYGYTIIYTHLPCLQVGSQKKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNDYEYNPYAKEFGISIDSKLASVEARVLPAPWLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFSQDPVIPVYSSRPDMVKKALKYVHSASLDKLGGKELELLIAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDPCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFKCWKDPHHGIVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLETSYQPPVTFVVVQKRHHTRLFSNNHDDKNSTDKSGNILPESFHQRVPWWIQRSVIQLNLTSTCAVMQEFSYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVREIAKSRGGRSKNESVRPLPALKEKVKNVMFYC. 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01180 906 ProSiteProfiles Piwi domain profile. 575 810 IPR003165 GO:0003676
Seca12g01180 906 Gene3D - 644 818 IPR036397 GO:0003676
Seca12g01180 906 CDD PAZ_argonaute_like 286 400 - -
Seca12g01180 906 SMART DUF1785_2 234 286 IPR014811 -
Seca12g01180 906 Pfam PAZ domain 312 417 IPR003100 GO:0005515
Seca12g01180 906 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 76 810 - -
Seca12g01180 906 Pfam Argonaute linker 2 domain 429 473 IPR032472 -
Seca12g01180 906 SUPERFAMILY Ribonuclease H-like 565 871 IPR012337 -
Seca12g01180 906 Pfam N-terminal domain of argonaute 92 225 IPR032474 -
Seca12g01180 906 Pfam Argonaute linker 1 domain 235 284 IPR014811 -
Seca12g01180 906 CDD Piwi_ago-like 445 869 IPR045246 -
Seca12g01180 906 SMART Piwi_a_2 575 870 IPR003165 GO:0003676
Seca12g01180 906 FunFam Argonaute 10 465 638 - -
Seca12g01180 906 Pfam Mid domain of argonaute 484 561 IPR032473 -
Seca12g01180 906 Gene3D - 465 638 - -
Seca12g01180 906 Gene3D paz domain 281 405 - -
Seca12g01180 906 Gene3D - 826 906 IPR036397 GO:0003676
Seca12g01180 906 MobiDBLite consensus disorder prediction 28 59 - -
Seca12g01180 906 Pfam Piwi domain 576 808 IPR003165 GO:0003676
Seca12g01180 906 SMART PAZ_2_a_3 291 423 IPR003100 GO:0005515
Seca12g01180 906 ProSiteProfiles PAZ domain profile. 287 401 IPR003100 GO:0005515
Seca12g01180 906 FunFam Protein argonaute-2 280 406 - -
Seca12g01180 906 MobiDBLite consensus disorder prediction 28 69 - -
Seca12g01180 906 SUPERFAMILY PAZ domain 282 441 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01180 Seca-Chr12 11494190 11506956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01180 76 906 Eukaryotic Initiation Factors Gene Family AT5G43810 68.276 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01180 K11593 - gmx:100808457 1550.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01180 12 11494190 11506956 Seca12g01180 12 11494190 11506956 ECH
Seca12g01180 12 11494190 11506956 Seca12g01180 12 11494190 11506956 PCT