Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01179 ATGGAGATGGGTTCCCATGAATGTTTTGTAACAAAGATGGATGACCTTGACAACATGATGCCTCACTCTTCCCTCCACAATTCACAACTCTCTTCCTGCGACTCCAACCACACCTCATCTTCACCCTCTCAATCTCCTCTCTCTGAACTAACCGAAGAAGAAGACTCAGGGATAAGGCTAGTGCACATGCTCATCTCCTGTGCCGATTCTCTCCAACGTGGCAACCTCTCCCTCGCTGTTTCCCTCCTCCACGCCATGCAATCTCTCCTTCAACACCTCACCACCGATTCCGGAATCGGAAAAGTCGCCACCTACTTCATCCACGCCCTCGCCACCAGGATCTTCGCGCCACAACACACACAAATTACACAACGACTAAACGACGACGTTCTCTACCACCACTACTACGAGGCTTGTCCTTACCTCAAGTTCGCGCACTTCACCGCCAATCACGCCATCCTCGAAGCCTTCAACGGCCATAACTCTCTCCACGTCATCGACTTCGACCTCATGCACGGCCTCCAATGGCCGCCTCTCATCCACGCCCTCTCCCTCCGTCAAGGAGATCCTCCCTCCCTCCGCTTGACCGCCGTCGGTCCTCCCTCGCCGGCGCTCCGACAAATCGGCCTCCGACTCACCGAAATGGCTCGCTACGTCAACCTACGGTTCGCGTTCCGTAGTTTTCCGGCGTCCCGGCTAGAGGACGTGAATCCGTCGATGCTGCAGGTGAATCCGAAGGAAGCGGTGGCGGTGAACTCGATCATGCAGCTCCACCGTCTCATCGGGTCTGACCCGACCCGTGGAGACTCGGAATCTGGTATTGATTTTGTTCTTGGTTGGATCCGGAGGCTGAACCCGAAAATCATGACGGTGGTTGAGCAAGAAGCGAATCACAATCAGACCGGGTTCTTGGAGCGGTTCACTGAGGCGTTGCATTATTATTCGGCCGTTTTTGACTCGCTGGAGGTTTGTCCGGTCGAACCGGATAAGGCTATGGCTGAAATGTACCTTCAGAGGGAAATTTGCAACGTGGTGGGCTGTGATGGACCGGCTCGGGTGGAGAGACACGAGCCGCTGGTAAAATGGAAGGCTCGGCTCGGGAAAGCGGGGTTTAAGAGTGTGGATTTAGGTTCGGATGCGTTGAAGCAAGCAAGGATGCTGTTGAGTCTGTTTTCGGCTGAGGGTTACAGCGTGGAAGAGAGAGAAGGGTGTTTAACGCTGGGTTGGCATGATAAACCTCTCATTGCGGCTTCGGCTTGGCAAGCTGAGCCCCTACCTCAGAGTGAGTGA 1290 0.5465 MEMGSHECFVTKMDDLDNMMPHSSLHNSQLSSCDSNHTSSSPSQSPLSELTEEEDSGIRLVHMLISCADSLQRGNLSLAVSLLHAMQSLLQHLTTDSGIGKVATYFIHALATRIFAPQHTQITQRLNDDVLYHHYYEACPYLKFAHFTANHAILEAFNGHNSLHVIDFDLMHGLQWPPLIHALSLRQGDPPSLRLTAVGPPSPALRQIGLRLTEMARYVNLRFAFRSFPASRLEDVNPSMLQVNPKEAVAVNSIMQLHRLIGSDPTRGDSESGIDFVLGWIRRLNPKIMTVVEQEANHNQTGFLERFTEALHYYSAVFDSLEVCPVEPDKAMAEMYLQREICNVVGCDGPARVERHEPLVKWKARLGKAGFKSVDLGSDALKQARMLLSLFSAEGYSVEEREGCLTLGWHDKPLIAASAWQAEPLPQSE. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01179 429 Pfam GRAS domain family 60 421 IPR005202 -
Seca12g01179 429 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 46 417 IPR005202 -
Seca12g01179 429 MobiDBLite consensus disorder prediction 20 52 - -
Seca12g01179 429 MobiDBLite consensus disorder prediction 21 51 - -
Seca12g01179 429 ProSiteProfiles GRAS family profile. 51 421 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01179 Seca-Chr12 11489977 11491266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01179 50 421 GRAS Transcription Factor Family AT1G14920 50.919 1.41e-134 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca12g01179 GRAS 7.8e-120 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01179 K14494 - nnu:104592329 536.954