Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01170 ATGAAAGGGGAAGTGCAGCTTCAACCTCCATCGGTTCTGCAAAACCCTAGTGATTCCGACCCTTTACTCGACAATCAGGAGGCAGATGAGTCCCCTGGATCAAGCTCTAGTGAGATTAAGGATGAGGATGACGTTGAGGCTGGCTCACTCCCTTGTTGTCGAATTTGCCTAGAAAGCGATTCCGACCCAGAGGATGAATTGATATCTCCATGCATGTGCAAAGGGACCCAACAGTTTGTCCACCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGATTTGCCTTCTCACACTGCACCACTTGCAAAGCACAATTTCATCTTAGAGTTGAAATGTTTGAGGATAACTCTTGGCGTAAAATAAAGTTCAGACTTTTTGTGGCAAGGGATGTTTTCCTTGTTTTTCTGGCTGTACAAACTGTAATTGCTGCTATTGGTGGCTTTGCGTACATCATGGACAAAGATGGGACCTTCAGGAACTCATTTGATGATGGTTGGGATAGGATACTTTCAAAGCATCCTATACCATTTTATTATTGTATTGGTAAGCTTAATTGTTTGAATGCTCTAGCTTTTATCTCTCCCTCTGATGGTTTAATCCATATACCAGGAGTGCTGGCCTTCTTTGTACTGATTGGATTTTTTGGTCTCATACTGCATTGCTCTTCCCTCAATTCCAATGACCCCAGAATGGCTGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCTGCATCAATGGAGGCGTGCTTTGCCCTTGTGGTTGTTTTCGTTGTCATTTTTGCAATTCTTGGTATAGCTTATGGTTTTCTTGCAGCCACCATGGCCATTCAAAGAATTTGGCAGAGGCACTACCATATCCTCACCAAGAGGGAGCTTACGAAGGAATACATAGTAGAGGATCTTGGTGGCTGTTATTTCCCACCAAAATTAGACCCAGAACATGAAAGCCGCTTGAAAATGCTTAAGCTTTTGTGA 993 0.4361 MKGEVQLQPPSVLQNPSDSDPLLDNQEADESPGSSSSEIKDEDDVEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVEMFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYIMDKDGTFRNSFDDGWDRILSKHPIPFYYCIGKLNCLNALAFISPSDGLIHIPGVLAFFVLIGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLGGCYFPPKLDPEHESRLKMLKLL. 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01170 330 SUPERFAMILY RING/U-box 50 108 - -
Seca12g01170 330 SMART ringv_2 52 104 IPR011016 GO:0008270
Seca12g01170 330 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 6 330 - -
Seca12g01170 330 MobiDBLite consensus disorder prediction 1 45 - -
Seca12g01170 330 MobiDBLite consensus disorder prediction 8 33 - -
Seca12g01170 330 ProSiteProfiles Zinc finger RING-CH-type profile. 45 110 IPR011016 GO:0008270
Seca12g01170 330 CDD RING_CH-C4HC3_MARCH 53 104 - -
Seca12g01170 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 35 118 IPR013083 -
Seca12g01170 330 Pfam RING-variant domain 53 103 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01170 Seca-Chr12 11370710 11374948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01170 1 330 C3H Transcription Factor Family AT1G11020 74.636 1.92e-166 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01170 - - gmx:100818950 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01170 12 11370710 11374948 Seca12g01170 12 11370710 11374948 ECH