Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01169 ATGGTGGTGCCGATGGCTATGTGCGGAGAAGAAGAGATTGAATTGTCAAGGGATGGCAGTCACTACAGTCTCACTACCGGGATTTTGCCTTCTCTCGGTGCCAGAAGTAACCGCAGAGTTAAACTCAAGCCCCTTATTATATCGCCCTATGACCGCCGTTACAGGATATGGGAAACTTTCCTTGTTACTCTGGTAGTCTATACTGCTTGGGTATCTCCCTTTGAATTTGGGTTCCTTAGGAAACCACAAGCACCCCTTTCTATAACAGATAATATTGTCAATGGATTCTTTGCTGTGGATATAGTTCTCACCTTCTTTGTGGCTTACATAGACAAAGCTACCTATTTGTTTGTGGATAGCCAAAAAAAGATTGCTTGGAAATATGCAAGAACTTGGTTGGCCTTTGATGTTATCTCTATCATTCCTTCAGAGCTTGTTGCAAAGCTATCACCTTCCCCTATCCAAACTTATGGGCTATTCAATATGCTTCGCCTTTGGCGTCTTCGAAGACTTATAACGGTAAATATTATGTTTTTTGAGAGTAGGCTTGAGAAGGACAGAAACTTTAACTACTTTTGGGTTCGGTGTGCCAAGCTTATCTGTGTTACCCTTTTTGCTGTTCATTGTGCTGGATGCTTTTATTATCTCATTGCTGCACGTTATCATGATCCCAAAAACACATGGATTGGGCAATCAATGGACAATTTCCAAGAGCAGAGCTTGTGGACAAGATATGTGACATCTATTTACTGGTCTATTACTACTTTAACAACGGTTGGTTATGGGGATCTGCATCCAGTGAATCAAAGGGAGATGGTCTTTGACATCTTTTACATGCTCTTCAATCTGGGATTGACAGCATATCTGATTGGTAATATGACTAACTTAGTTGTCCATGGCACAAGTCGAACTAGAAAATTTAGGGATACCATACAAGCTGCATCAAGTTTTGCTCAAAGGAACCAATTGCCTCATCGTCTGCAAGATCAAATGCTTGCTCACTTGTGTTTGAAGTTTAGAACAGATTCTGAAGGGTTGCAGCAGCAAGAGACACTTGAATCTCTTCCTAAAGCCATCAGATCAAGCATTTCACATTACCTTTTCTATTCTCTGATGGATAAGGTCTATTTGTTTCGTGGAGTTTCAAATGACTTACTCTTTCAATTGGTGTCAGAGATGAAACCTGAGTATTTTCCACCCAAAGAAGATGTTATCTTGCAGAATGAAGCCCCCACTGATTTTTATATTCTAGTCACCGGTGCTGTGGACCTACTAGTTCTTAAAAATGGGGTTGAACAGGTTGTTGGAGAGGCAAAAACTGGAGATCTCTGTGGTGAGATTGGTGTGCTCTGCTATAAGCCACAGCATTTCACAGTTCGAACAAAGCGATTAAGTCAGCTGCTGAGGCTGAACCGTACTACATTCTTGAATATTGTTCAGGCCAATGTTGGGGACGGAACCATAATCATGAATAATCTCCTTCAGCATTTGAAAGAGCTGAATGATCCAATAATGGAGGGAGTTTTGGTGGAGACTGAGAACATGTTAGCTCGTGGTAGGATGGACCTACCAGTAAGTCTATGCTTTGCAGCAGTAAGAGGGGATGATTTGCTGTTACATCAATTGCTAAAACGGGGCCTGGATCCAAATGAATCCGACAACAATGGAAGGACAGCCTTGCATATAGCAGCATCCAAAGGAAAAGAGAACTGTGTTTTGCTTCTGTTAGATTATGGGGCAGATCCAAATACTAGAGATTCCGATGGAAATGTACCACTGTGGGAAGCTATAGTTGGTGGACATGAATCAGTGACCAAGCTGTTGGTGGAAAATGGCGCTACCTTGCAATGTGGTGATGTGGGTCAATTTGCATGCACTGCTGCTGAACAGAACAATCTCAACTTGCTCAAGGACATAGTACGTCATGGAGGAGATATCACACTATCAAACAGCAACGTTGGGACCACAGCTCTGCACGTTGCAGTCTCCGAAGACAATGTTGAGATTGTCAAATTCCTTTTAGATCACGGGGCAAACATTGACCAACCAGACAAGTATGGTTGGACCCCAAGAGATCTAGCAGATCAACAAGGACATCAAGATATTAAGGCCATTTTTGAGTCCACTGGTGAGCCTAAGGCTCAGTCTTTTGTTGCTATTCCTGAGAGGCAGCAGAGTAAGATCAGGTTCCTAGGCAGATTCACAAGTGAGCCAACAATGCCTTCACCCAATGATGGCTCATTTCATGGAACAGATGGCTCTTGGAGCCAAAGCCGTCCAAGGCGTAGGACCAATAACTACCACAACTCACTCTTTGGGATAATGACTGCAGCACACAAAGGGGAAAATGACCTGCTTTTCTCTGTTAACATGAATAACAATGCAAAGAATGGTATGAAGAGTAGAGTTCTCCCAACTAGAGTAACAGTTAGTTGCCCTGAAAAGGGTGAGGTTTCTGGGAAGCTTGTATTACTACCTGGAAGCTTTAAAGAGCTACTTGAGATTGGAGCTAAAAAATTTGGTGTCTTTCCTGCTAAGGTTGTGTGCAAGGATGGAGCTGAAATTGATGATATAGAGGTGATTAGAGATGGTGACCATCTTGTTTTTGTCAGTGCTGGTGGGGTACTAGAGTCCAATGGTCCACAACACACCAATGGTGTGCTTCCATAG 2670 0.4273 MVVPMAMCGEEEIELSRDGSHYSLTTGILPSLGARSNRRVKLKPLIISPYDRRYRIWETFLVTLVVYTAWVSPFEFGFLRKPQAPLSITDNIVNGFFAVDIVLTFFVAYIDKATYLFVDSQKKIAWKYARTWLAFDVISIIPSELVAKLSPSPIQTYGLFNMLRLWRLRRLITVNIMFFESRLEKDRNFNYFWVRCAKLICVTLFAVHCAGCFYYLIAARYHDPKNTWIGQSMDNFQEQSLWTRYVTSIYWSITTLTTVGYGDLHPVNQREMVFDIFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKFRDTIQAASSFAQRNQLPHRLQDQMLAHLCLKFRTDSEGLQQQETLESLPKAIRSSISHYLFYSLMDKVYLFRGVSNDLLFQLVSEMKPEYFPPKEDVILQNEAPTDFYILVTGAVDLLVLKNGVEQVVGEAKTGDLCGEIGVLCYKPQHFTVRTKRLSQLLRLNRTTFLNIVQANVGDGTIIMNNLLQHLKELNDPIMEGVLVETENMLARGRMDLPVSLCFAAVRGDDLLLHQLLKRGLDPNESDNNGRTALHIAASKGKENCVLLLLDYGADPNTRDSDGNVPLWEAIVGGHESVTKLLVENGATLQCGDVGQFACTAAEQNNLNLLKDIVRHGGDITLSNSNVGTTALHVAVSEDNVEIVKFLLDHGANIDQPDKYGWTPRDLADQQGHQDIKAIFESTGEPKAQSFVAIPERQQSKIRFLGRFTSEPTMPSPNDGSFHGTDGSWSQSRPRRRTNNYHNSLFGIMTAAHKGENDLLFSVNMNNNAKNGMKSRVLPTRVTVSCPEKGEVSGKLVLLPGSFKELLEIGAKKFGVFPAKVVCKDGAEIDDIEVIRDGDHLVFVSAGGVLESNGPQHTNGVLP. 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01169 889 ProSiteProfiles KHA domain profile. 807 887 IPR021789 -
Seca12g01169 889 ProSiteProfiles Ankyrin repeat region circular profile. 588 615 - -
Seca12g01169 889 ProSiteProfiles Ankyrin repeat profile. 653 685 IPR002110 GO:0005515
Seca12g01169 889 CDD CAP_ED 377 482 IPR000595 -
Seca12g01169 889 SUPERFAMILY Ankyrin repeat 526 709 IPR036770 -
Seca12g01169 889 Pfam Ion transport protein 55 304 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca12g01169 889 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Seca12g01169 889 FunFam Potassium channel KAT3 56 299 - -
Seca12g01169 889 ProSiteProfiles Ankyrin repeat profile. 555 587 IPR002110 GO:0005515
Seca12g01169 889 PRINTS Ankyrin repeat signature 669 683 IPR002110 GO:0005515
Seca12g01169 889 PRINTS Ankyrin repeat signature 556 571 IPR002110 GO:0005515
Seca12g01169 889 ProSiteProfiles Ankyrin repeat region circular profile. 555 586 - -
Seca12g01169 889 Pfam Ankyrin repeats (many copies) 648 694 IPR002110 GO:0005515
Seca12g01169 889 SMART ANK_2a 619 648 IPR002110 GO:0005515
Seca12g01169 889 SMART ANK_2a 555 584 IPR002110 GO:0005515
Seca12g01169 889 SMART ANK_2a 522 551 IPR002110 GO:0005515
Seca12g01169 889 SMART ANK_2a 588 617 IPR002110 GO:0005515
Seca12g01169 889 SMART ANK_2a 653 682 IPR002110 GO:0005515
Seca12g01169 889 ProSiteProfiles cAMP/cGMP binding motif profile. 377 479 IPR000595 -
Seca12g01169 889 Gene3D - 56 298 - -
Seca12g01169 889 PRINTS EAG/ELK/ERG potassium channel family signature 90 100 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g01169 889 PRINTS EAG/ELK/ERG potassium channel family signature 101 110 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g01169 889 PRINTS EAG/ELK/ERG potassium channel family signature 271 282 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g01169 889 PRINTS EAG/ELK/ERG potassium channel family signature 67 74 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g01169 889 PRINTS EAG/ELK/ERG potassium channel family signature 245 262 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g01169 889 PRINTS EAG/ELK/ERG potassium channel family signature 289 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Seca12g01169 889 PANTHER POTASSIUM CHANNEL AKT1 20 871 IPR045319 GO:0005249|GO:0006813
Seca12g01169 889 SUPERFAMILY cAMP-binding domain-like 302 497 IPR018490 -
Seca12g01169 889 Pfam KHA, dimerisation domain of potassium ion channel 807 869 IPR021789 -
Seca12g01169 889 MobiDBLite consensus disorder prediction 734 762 - -
Seca12g01169 889 Pfam Ankyrin repeats (3 copies) 528 616 IPR002110 GO:0005515
Seca12g01169 889 Gene3D - 523 707 IPR036770 -
Seca12g01169 889 Pfam Cyclic nucleotide-binding domain 396 481 IPR000595 -
Seca12g01169 889 SUPERFAMILY Voltage-gated potassium channels 49 298 - -
Seca12g01169 889 Gene3D Jelly Rolls 341 502 IPR014710 -
Seca12g01169 889 FunFam Potassium channel KAT2 365 501 - -
Seca12g01169 889 ProSiteProfiles Ankyrin repeat region circular profile. 653 685 - -
Seca12g01169 889 SMART cnmp_10 377 494 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01169 Seca-Chr12 11360227 11367515 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01169 15 869 Ion Channels AT2G25600 63.879 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01169 K21867 - gmx:100819491 1525.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01169 12 11360227 11367515 Seca12g01169 12 11360227 11367515 ECH