Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01158 ATGGAGGACAGGAAAGTGCACACGATCGCTGTTATATCAGTGATTGCTCTGATCATTGTCATAATCGTTGCTCGTGTCTCCTTAAAGCTCTCAAGAGTTTTCTTCCTCATTTGTGGTGCTACTGTTGCTGTGATTCTTGCTGTCTTTTGTTGTTTACTCATCAGGCATCGTTACAACCGAAGAAGAAAGTTATTGGAGTCAAGATTCAAATCAGAAGGCAGAGAGCTTCGAATAGAGTACAGTTTCTTAAGAAAAGTTGCTGGGGTTCCTATAAAGTTTCGATACAAGGAGCTTGAGGAAGCAACCGATGGTTTTCAAGCACTTTTAGGAAAAGGGTCCTCTGCTTCTGTTTTCAAAGGCATTCTCAATGATGGTACTTCAGTTGCTGTGAAACGAATTGATGGAGAGGAAAGAGGAGAGAAGGAGTTCAGATCAGAAGTTGCAGCCATTGCTAGTGTTCAACATGTGAACCTTGTAAGACTATTTGGCTATTGTAATGCTCCTACAGCACCTAGGTACCTTGTTTATGAGTATATTCCAAATGGGTCTTTGGAGGAAAATAGGACACGTCGTGGTGGGTGTTTACCATGGAATTTGAGGTATAAAGTTGCAATTGATGTTGCCAAGGCACTTAGTTACCTTCACCATGATTGTAGATCAAGGATTTTGCACCTTGATGTGAAGCCAGAGAATATACTTCTTGATGAGAATTATAAAGCGCTTGTTTCTGATTTTGGTCTCTCAACTCTTATTGGGAAGGATGTGAGTCAAGTTATGACAACAATAAGGGGAACTAGAGGGTACTTAGCCCCTGAATGGCTCTTAGAAAGGGGTGTTTCAGAGAAAACTGATATATATAGTTATGGGATGGTTCTGTTGGAGATAATTGGAGGGAGGAGAAATGTGTGTAGGGTAGAAGATCCTAGGGATAAGTCTAAGACAAAATGGCATTTTTTTCCAAAGATTGTGAATGAGAAAGTGAGAGAAGGGAAGTTTATGGAAATTGTGGATTCTAGGCTAGTGGAAAGAGGGGATGTTGATGAGAGTGAGGTGAGTAGATTGGTGTATATTGCTTTGTGGTGTATACAAGAGAAACCAAGATTGAGGCCTAGCATGGCACAAGTGGTGGATATGCTTGAAGGGCGTGTGAGTGTGGAAGATCCTCCAGGTACTAGAATGATTCTTGTTGACTTGTTAGATGAAGAACCTGCAGATCATAATAATCTTGCAAGGTTATTGACATCTATGTCCAGCCAGGAGGATTGTACATCTACATACTCCATGGGAACCACTATTTTATCTGGTAGATAA 1311 0.4088 MEDRKVHTIAVISVIALIIVIIVARVSLKLSRVFFLICGATVAVILAVFCCLLIRHRYNRRRKLLESRFKSEGRELRIEYSFLRKVAGVPIKFRYKELEEATDGFQALLGKGSSASVFKGILNDGTSVAVKRIDGEERGEKEFRSEVAAIASVQHVNLVRLFGYCNAPTAPRYLVYEYIPNGSLEENRTRRGGCLPWNLRYKVAIDVAKALSYLHHDCRSRILHLDVKPENILLDENYKALVSDFGLSTLIGKDVSQVMTTIRGTRGYLAPEWLLERGVSEKTDIYSYGMVLLEIIGGRRNVCRVEDPRDKSKTKWHFFPKIVNEKVREGKFMEIVDSRLVERGDVDESEVSRLVYIALWCIQEKPRLRPSMAQVVDMLEGRVSVEDPPGTRMILVDLLDEEPADHNNLARLLTSMSSQEDCTSTYSMGTTILSGR. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01158 436 ProSiteProfiles Protein kinase domain profile. 103 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01158 436 Pfam Protein kinase domain 108 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01158 436 SMART serkin_6 103 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01158 436 Gene3D Phosphorylase Kinase; domain 1 68 178 - -
Seca12g01158 436 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 33 389 - -
Seca12g01158 436 ProSitePatterns Protein kinases ATP-binding region signature. 109 131 IPR017441 GO:0005524
Seca12g01158 436 FunFam Putative receptor-like protein kinase 179 387 - -
Seca12g01158 436 SUPERFAMILY Protein kinase-like (PK-like) 86 380 IPR011009 -
Seca12g01158 436 FunFam Putative receptor-like protein kinase 70 178 - -
Seca12g01158 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 222 234 IPR008271 GO:0004672|GO:0006468
Seca12g01158 436 Gene3D Transferase(Phosphotransferase) domain 1 179 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01158 Seca-Chr12 11199983 11201314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01158 1 391 Receptor kinase-like Gene Family AT5G20050 65.835 0.0 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca12g01158 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01158 - - gmx:100779485 744.191