Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01153 ATGGCCACCACCACCACCACTCCTTGTAGAGATGAACCTGACTATGACAGCAGCTCCTCCTCCATCACCGTGCCGGAATCAAGCCGGAGCTGGATGAGCAACCTCAGCTTCGGCAGCCGCCGCCGCCGGAGCTCTGTCTCTGTTTGTTCCACCACCACAGATACCTCTCTGTTTCTCGGTTCCCACGCTAAGCCTCACAAGGCTAACCAAGCTGCATGGGAGGCCATGCGGCGGCTCCGTAGCGATAAGGGTCGGGTCGGACTCGACCACTTCCGCCTCCTCCGCCGCCTGGGAAGCGGTGACATAGGGAATGTGTATCTCTGCCAGATAAGGAACCCTGTTGTGGGGTTACCACAGTGCTTTTATGCTATGAAAGTTGTGGATAGAGAAGCACTTGCTATAAGGAAGAAGCTTCATAGAGCAGAGATGGAGAAGGAGATTTTGGGGTTGCTTGATCACCCTTTTTTGCCTACTTTATACACTGAGTTTGATGCTTCTCATTACTCTTGTTCAGTCATGGAGTTCTGTCCTGGTGGAGACTTGTATGCTGCTCGCCAACGCCAGCCAGGGAAGCGCTTTACCATATCATCCACTAAGTTTTATGCAGCTGAGACACTTTTGGCATTGGAGTATCTCCACATGATGGGAATAGTGTATAGGGATTTGAAGCCAGAGAATGTGCTGGTAAGGGAGGATGGGCATATTATGCTTTCAGATTTTGATCTTTCTCTTAAATGTGACGTTGTTCCTAAGCTTTTAAGGAGTAAGACAAGATTGGAGAGGAGTATCAAGAGTACTAAGAGATCTGCACCTTCCTGTGCTGCTCCCATGCAGCCTGTGCTGTCCTGTTTCTTAGCATCTAGCAAGAAAAAGAAAGCAGCAACTGTGACAACAGTTATAAGGGAAAATGTTGAGGTTGATGATCCTGAAGTGGTGGCAGAGCCAATTGATGCTAGGTCCAAGTCATTTGTTGGGACTCATGAGTACTTAGCACCAGAAGTGATATTGGGGCAAGGTCATGGGAGTGCAGTGGATTGGTGGACTTTTGGGGTGTTTTTGTATGAGATGTTATATGGGAGAACACCTTTCAAAGGTGAAAACAATGAGAAAACACTAGTGAACATCTTGAAGCAACCATTGACTTTCCCTAGAATTGCAGTGAGCAGTAGTAGTGAGTATGAAGAGATGGTGAAAGTTCAAGACCTTATAAACAAGCTCTTGGTGAAGAATCCAAATAAGAGAATTGGAAGCTGCATGGGTTCTGCTGAGATCAAAAGGCATGAGTTCTTCAAAGGTGTAAATTGGGCTTTAATTAGATCAATTAGGCCCCCTGAGGTTCCTGCTGATAAGAACAAGATTAGAAGTAGGGTTTTGGTACCAAAACTAAGCAAAACAGAAAGGGATCAACCATATCAGCTTTCTCATCATTTTGACTACTTCTAA 1443 0.4622 MATTTTTPCRDEPDYDSSSSSITVPESSRSWMSNLSFGSRRRRSSVSVCSTTTDTSLFLGSHAKPHKANQAAWEAMRRLRSDKGRVGLDHFRLLRRLGSGDIGNVYLCQIRNPVVGLPQCFYAMKVVDREALAIRKKLHRAEMEKEILGLLDHPFLPTLYTEFDASHYSCSVMEFCPGGDLYAARQRQPGKRFTISSTKFYAAETLLALEYLHMMGIVYRDLKPENVLVREDGHIMLSDFDLSLKCDVVPKLLRSKTRLERSIKSTKRSAPSCAAPMQPVLSCFLASSKKKKAATVTTVIRENVEVDDPEVVAEPIDARSKSFVGTHEYLAPEVILGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLVNILKQPLTFPRIAVSSSSEYEEMVKVQDLINKLLVKNPNKRIGSCMGSAEIKRHEFFKGVNWALIRSIRPPEVPADKNKIRSRVLVPKLSKTERDQPYQLSHHFDYF. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01153 480 Gene3D Transferase(Phosphotransferase) domain 1 317 448 - -
Seca12g01153 480 SUPERFAMILY Protein kinase-like (PK-like) 75 457 IPR011009 -
Seca12g01153 480 PANTHER FLIPPASE KINASE 1-RELATED 29 451 - -
Seca12g01153 480 Pfam Protein kinase domain 92 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01153 480 Pfam Protein kinase domain 320 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01153 480 ProSiteProfiles Protein kinase domain profile. 91 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01153 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Seca12g01153 480 Gene3D Transferase(Phosphotransferase) domain 1 176 245 - -
Seca12g01153 480 FunFam protein kinase PINOID 176 244 - -
Seca12g01153 480 FunFam serine/threonine-protein kinase D6PK-like 318 448 - -
Seca12g01153 480 Gene3D Phosphorylase Kinase; domain 1 89 175 - -
Seca12g01153 480 CDD STKc_phototropin_like 89 448 - -
Seca12g01153 480 SMART serkin_6 91 430 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01153 480 FunFam protein kinase PINOID 2 89 175 - -
Seca12g01153 480 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01153 Seca-Chr12 11148005 11150281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01153 1 480 AGC Kinase Gene Family AT2G26700 59.590 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca12g01153 Pkinase 2.7e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01153 K08286 - gmx:100777988 808.52