Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01146 ATGAGTTTTCCTGACCATCTTCCAGCCTTCATGATGTCACCGCCGTCATTTGCATCAGAAAGTGATGCCATTGATGTGAGGCTTCAATTCCCAATGAACAACGAAGCATTTGACCCATATTCAGAGTTGGATCAACCCCCTGCGTACAAGAGGGCCAGGACTTCTGATAGCAGCCACTCCAATGCCCCTCCAAGGATGATTCAGCAGGCACAAAACCCCCAACTCAACAAAGGAACGAGCCACATTTTCTTCAAGACCCGCATTTGTGCCAAGTTCAGACTTGGTGCTTGTAGGAACGGTGAGAACTGCAATTTTGCACATGGAGTTGAAGACATGAGGCAGCCACCACCAAATTGGCAGGAGCTTGTTGGCTTACGCAATGAAGAACGGTCTTCATCAGGGAATTGGGATGAGGACCAGAAAATCATTCATAAGATGAAGCTGTGCAAAAAATATTACAATGGGGAGGAATGCCCTTATGGTGAAAAGTGTAGTTTTCTTCATGAAGACCCCTCCAAGTTCAGGGATGATTCAGGGAGGTTCAGGGAGAGCTCAGCAATAAGCATAGGAACTAATGGATCCCCAAAGTCCTATGGTGACGGCTCTAATAATTCAGAAGGTAATAGGGCTGTGAACACAGGCCTCAATGTTTCACGGGGGAATGGAAAGTCCACTTATTGGAAGACCAAATTATGTATCAAGTGGGAGACAACAGGCCACTGTCCCTTTGGGGAGGATTGTCACTTTGCCCATGGACAAGGAGAGTTACAATTTGCTGGAGGACGCATTGAAGTAGAAACTGCAGGTGCCATTTCAAGTTCAGCTAAAGCTACCATTCCAACTATACCAAAAGCCTTGTCAGTTTCTGCTAATGATGCTCCTACTAACTACACAGCAAGTCTACCTCTGCCAAATGAAGAGGTGCAGGGTAAGAAGAATTTACTCAAGTGGAAAGGAACCAAGAAGATCAATCAAATTTATGGTGATTGGATTGATGATTTACCACTTGTTCCCAACTTGCTAAGTAGAGTGGAGACCTGA 1041 0.4534 MSFPDHLPAFMMSPPSFASESDAIDVRLQFPMNNEAFDPYSELDQPPAYKRARTSDSSHSNAPPRMIQQAQNPQLNKGTSHIFFKTRICAKFRLGACRNGENCNFAHGVEDMRQPPPNWQELVGLRNEERSSSGNWDEDQKIIHKMKLCKKYYNGEECPYGEKCSFLHEDPSKFRDDSGRFRESSAISIGTNGSPKSYGDGSNNSEGNRAVNTGLNVSRGNGKSTYWKTKLCIKWETTGHCPFGEDCHFAHGQGELQFAGGRIEVETAGAISSSAKATIPTIPKALSVSANDAPTNYTASLPLPNEEVQGKKNLLKWKGTKKINQIYGDWIDDLPLVPNLLSRVET. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01146 346 MobiDBLite consensus disorder prediction 184 216 - -
Seca12g01146 346 SUPERFAMILY CCCH zinc finger 225 257 IPR036855 GO:0046872
Seca12g01146 346 MobiDBLite consensus disorder prediction 36 74 - -
Seca12g01146 346 FunFam Zinc finger CCCH domain-containing protein 221 258 - -
Seca12g01146 346 PANTHER CCCH ZINC FINGER/TIS11-RELATED 52 177 IPR045877 GO:0003729
Seca12g01146 346 ProSiteProfiles Zinc finger C3H1-type profile. 143 171 IPR000571 GO:0046872
Seca12g01146 346 SUPERFAMILY CCCH zinc finger 143 170 IPR036855 GO:0046872
Seca12g01146 346 Gene3D - 140 172 - -
Seca12g01146 346 Gene3D - 221 258 - -
Seca12g01146 346 Gene3D - 77 114 - -
Seca12g01146 346 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Seca12g01146 346 SMART c3hfinal6 83 109 IPR000571 GO:0046872
Seca12g01146 346 SMART c3hfinal6 143 170 IPR000571 GO:0046872
Seca12g01146 346 SUPERFAMILY CCCH zinc finger 81 114 IPR036855 GO:0046872
Seca12g01146 346 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Seca12g01146 346 FunFam Zinc finger CCCH domain-containing protein 78 114 - -
Seca12g01146 346 MobiDBLite consensus disorder prediction 175 216 - -
Seca12g01146 346 ProSiteProfiles Zinc finger C3H1-type profile. 83 110 IPR000571 GO:0046872
Seca12g01146 346 MobiDBLite consensus disorder prediction 51 74 - -
Seca12g01146 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 227 253 IPR000571 GO:0046872
Seca12g01146 346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 108 IPR000571 GO:0046872
Seca12g01146 346 FunFam Zinc finger CCCH domain-containing protein 39 140 172 - -
Seca12g01146 346 Pfam CCCH-type zinc finger 147 168 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01146 Seca-Chr12 11088219 11090618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01146 228 257 C3H Transcription Factor Family AT1G68200 60.000 1.04e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g01146 zf-CCCH 1.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01146 - - gmx:100793865 555.058