Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01132 ATGGCATGGTCCGAAAATGCTGCTTCCCATTTCCCTCAAAAACCACCTCCCCGCACCTCTCGCCCCCGTTACGTCCCTCCACACCGCGCTAACGACGCCGTTTCACCTTACAACAATCCAACCTCCTTTCCTTTCTCCGACGATGGCCTTAACCGTTCCGGTGACAGGCCACGTGGCCGTGGCGGTTCCCGTGGGGGCCGCCGGTATACTCGCACCGAAGAACAGCCTCGTGACCGCGAGACTTTTCCCCGGGACGATCGGTTCCCCTTCGAGGAAGCAGAAAACGCCGGCGTTACGAATTTTGATGCGTACGAATCGGTGCCGGTGGAGGCGAGCGGCGAGAATATTCCACCGCCGGTGAATATCTTCGCGGAAACTGACCTAGATGATGATTTGAAGAAGAACATCGAGCGATGCAAGTACGTGAAACCCACACCTGTTCAACGTCACGCCATACCTATTGCCGTTGCGGGCCGCGACTTGATGGCGTGTGCGCAGACCGGGTCGGGTAAAACGGCAGCGTTTTGTTTTCCTATTATATCTGGGATTCTGAAGGATCGTTCTGGTTCGGCTAACGGATTTTCTTCCATCCCTCGTAACGCCATTATTGCATATCCCACTGCTCTTATACTGTCCCCTACTAGGGAGTTATCATGCCAGATACATGCTGAAGCGAACAAGTTTGCATATCAAACAGGAGTGAAGATTGTAGTTGCTTATGGTGGAGCTTCCATTGGTCAGCAGCTGCGGAATTTGGAGAAAGGGGTTGACATATTGGTTGCAACTCCTGGGCGATTGGTGGATATGATTGAGAGAGAAAGGGTTTCTTTAACGAGGATTAAATATCTTGCTTTGGATGAAGCAGACCGTATGTTAGACATGGGTTTTGAGCATCAAATACGCAAGATTGTGGAGCAGATGCACATGCCACCGCCAGGTTCTAGACAGACAATGCTCTTTAGTGCTACATTCCCTGATGATATACAGAAGCTGGCGTCTGACTTTCTATCAAACTACATATTTCTGGCTGTTGGAAGGGTTGGTTCAAGCACTGATCTGATTGCACAGAGATTTGAACTTGTACAGGATCAGGATACAGATAAGAGAAATCATCTTGTGGATCTTCTTTGTCGTCAAAGGGCACATGGAGCCAATGGGAAGCAAGCTCTAACTCTTGTATTTGTTGAAACAAAGAGAGGAGCAGATGCTTTAGAAAACTGGCTGTCGAGAAATGGGTTTCCGGCTATTGCAATACATGGTGATAAAGTTCAAATGGAGCGGGAACGAGCTTTAAGATCTTTCAAACGTGGTTTTACTCCGATTTTGGTAGCAACTGATGTTGCTTCCCGAGGTTTAGATATTCCACATGTGGCTCATGTTATCAACTTTGACTTGCCTAGAGACATAGATGACTACGTACATAGGATTGGCAGAACAGGCCGTGCTGGTAAATCTGGATTAGCTACTGCCTTCTTCAGTAACAAGAACATCCCTATTGCAAAAGCCCTTGTTGGACTTTTGCAGGAAGCAAAGCAGGAAGTTCCACATTGGCTCAGCAAATACGCTGAGTGTTCATCATCTGGTGGTCGTAGTCATGGAGCTCAGCAGTATGGCAGAGGCAATTATGGTGGCCGTGATTTCCGAAATCCCATTGAACCTGAGGTGGAGAATCGCAACTATAATGGCCGTGATTTCCGAAATTCCATTGAACCTGAGGTGGAGGATCGCAACTACAATACGTATGGCAATGCAGATCATGCTGTGGACAACTACAATACATATGGCAATGCTGACCATGCTGTGGACTCTTCCCCTTACATTGACATGAAAAACTCTAATAGTGATTCCTCTTTTGACTTCAGGAACACAGTTTGTACTGATGCTAATGCTGATTTGTATGAAGGTGGGGACGATGGAAATGGGCCATGTGGTTATAAATCTGTCGTTGCCAGTGGATGGGACTAG 1965 0.4768 MAWSENAASHFPQKPPPRTSRPRYVPPHRANDAVSPYNNPTSFPFSDDGLNRSGDRPRGRGGSRGGRRYTRTEEQPRDRETFPRDDRFPFEEAENAGVTNFDAYESVPVEASGENIPPPVNIFAETDLDDDLKKNIERCKYVKPTPVQRHAIPIAVAGRDLMACAQTGSGKTAAFCFPIISGILKDRSGSANGFSSIPRNAIIAYPTALILSPTRELSCQIHAEANKFAYQTGVKIVVAYGGASIGQQLRNLEKGVDILVATPGRLVDMIERERVSLTRIKYLALDEADRMLDMGFEHQIRKIVEQMHMPPPGSRQTMLFSATFPDDIQKLASDFLSNYIFLAVGRVGSSTDLIAQRFELVQDQDTDKRNHLVDLLCRQRAHGANGKQALTLVFVETKRGADALENWLSRNGFPAIAIHGDKVQMERERALRSFKRGFTPILVATDVASRGLDIPHVAHVINFDLPRDIDDYVHRIGRTGRAGKSGLATAFFSNKNIPIAKALVGLLQEAKQEVPHWLSKYAECSSSGGRSHGAQQYGRGNYGGRDFRNPIEPEVENRNYNGRDFRNSIEPEVEDRNYNTYGNADHAVDNYNTYGNADHAVDSSPYIDMKNSNSDSSFDFRNTVCTDANADLYEGGDDGNGPCGYKSVVASGWD. 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01132 654 MobiDBLite consensus disorder prediction 1 101 - -
Seca12g01132 654 MobiDBLite consensus disorder prediction 525 579 - -
Seca12g01132 654 FunFam Probable ATP-dependent RNA helicase DDX4 84 344 - -
Seca12g01132 654 MobiDBLite consensus disorder prediction 549 573 - -
Seca12g01132 654 FunFam ATP-dependent RNA helicase RhlB 345 526 - -
Seca12g01132 654 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 500 IPR027417 -
Seca12g01132 654 CDD SF2_C_DEAD 354 492 - -
Seca12g01132 654 SMART ultradead3 140 357 IPR014001 -
Seca12g01132 654 Gene3D - 84 344 IPR027417 -
Seca12g01132 654 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 152 342 IPR014001 -
Seca12g01132 654 MobiDBLite consensus disorder prediction 34 48 - -
Seca12g01132 654 Gene3D - 345 525 IPR027417 -
Seca12g01132 654 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 522 IPR001650 -
Seca12g01132 654 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 121 149 IPR014014 GO:0003724
Seca12g01132 654 MobiDBLite consensus disorder prediction 51 92 - -
Seca12g01132 654 Pfam Helicase conserved C-terminal domain 368 483 IPR001650 -
Seca12g01132 654 SMART helicmild6 402 483 IPR001650 -
Seca12g01132 654 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 93 522 - -
Seca12g01132 654 CDD DEADc_DDX3_DDX4 123 348 IPR044763 GO:0003724|GO:0005524
Seca12g01132 654 Pfam DEAD/DEAH box helicase 145 331 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01132 Seca-Chr12 10989245 10992518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01132 119 501 Eukaryotic Initiation Factors Gene Family AT3G19760 32.468 3.97e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01132 K11594 - gmx:100817549 773.852