Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01121 ATGCTTGATTCTGGCAACTTTGTGCTTTATGGTGATGAGCAATCTAACGTTCTCTGGCAAAGCTTTGATTTTCCAACTGACACCATATTAGGAGGTCAGAATTTAACTCGCTATGATGGGCTGGTCTCTAGTAAGTCCAAATCAGACCATTCGAGTGGACGTTTCTATCTCACCATGCAATTTGATGGAAACCTTGTTGCTTACCCTTTGAACAGCAGCTCAGTAGACCAGGAAGATGCTTACTGGGCTGCACAGACTTCGTATTACCAATATCCCAGTTTTAACCTTGAAGGCTTTCTCTGCCTAAATAATCTATGTTTTAATGATAGTATTTTTAAGCCTAGAAAGAAGCCCGAGAGCAGCACAACTTCTTCAATCTACCGTGCAACACTTGACGTAGATGGGAACTTCAGATTGTATGAGCACCAATTTGAGGGCAATACTACTTCTTCTTCTTCAAGCTCACACATGGAAATTTTGTGGCAAGCACTGAATGATACATGTCAAATCAAGGGGTTTTGTGGCTTCAACAGTTATTGCTCTAACAAGAGCGGCAAGGCTGTATGCGAGTGTTATCCTGGTTTCTTCCCCACCAAAAGCAGTGGTAACGTGTCTCTGGACTGTGTACCACAGACCCATAGCAAAGATGATTGTGAAAGCAGTGAAGACTCAAAGATGTTATATAATGTTACTCACTTGGAGAATATGTCTTGGGGTGGTCTTCCATATTCGGTTATACCAGGGATGAAGAAGGAAACTTGTGAGAATTCTTGCCGGGAAGATTGTTATTGTGGGGGAGCATTATATTCTAGCAGTAACTGCAGTAAATATAAGCTTCCACTTATGTATGGCACAAGAAGGACGTTTCAAAATCAATTAACAGTGGTGGCCTTGTTAAAGATGGCCTCAGGAAATGTCACTCCTCCAATTCTAACTTTTGACGGGACCAACGAGTCTAAGGGGCCTAAGGTCATCGTAGATAACAAGGGAAGTCTGATTATGATTCTAGCCCTCACACTGGGTTTCATTTCATTGCTCTGTTTGGTCTTTGCAGTGTCCATTTTCTTCACTTACAGGCGTCAAGTTTATAGGTATACAACTTTGTCTGCAACTGAAAATCTGGGATTTACTGAAGAATGTTCATTGCGTTCATTTACTTTTGATGAGCTTGTGAAGTCAACTGGTGGATTCACTGAGGAGATAGGCAGAGGGTCATTTGGAGCTGTTTATAGAGGCACAATTGGTGACAGTAACAGGAGCATTGCTGTCAAGAGACTGGAGAAAATTGCTGATGAAGGGGAGAGGGAATTCCGAGCTGAAATTACTGCCATTGCTCGAACTCATCACAGGAATTTGGTTAAGCTGATTGGTTTTTGTATAGATGGATCTAAGAAGCTTCTTGTTTATGAATATCTCAGCAATGGGTCCCTTGCAAATCTCATCTTTAACAGGGAGATGAAGCTGTCTTGGAAAGAGAGAATAAAGATGGCATTGGATGTGGCTAGAGGAATCCTGTATCTACATGAAGAGTGTGAAGTCCGTATTATCCATTGCAATATAAAGCCTAAAAATATATTAATGGATGAAGCATGGACTGCAAAGATCTCTGATTTTGGATGGGCAAGGCTATTAAAGCCGGAGTATTCAAGAATGCAAAATGGGGATGATGGGAAAAGCAGGTACTTGGCACCTGAATGGCACAAGGATGCATCAATATCTGTGAAAGCTGACACTTACAGTTTTGGCAAAGTATTATTGGAGATTGTCTGTCGCAGAAGCAATATAGAGATAGATGTTTCATCAGCTGAGGAGATACTTCTTTCCAGTTGGGTATATCAGTGCTTTGTAGCAGGGCAGTTAAATAAGCTTGTTACACATGATGAAGAAGATGTAAATTGGAAGATATTGGAAAGAATGGTGAAGGTGGGGTTGTGGTGTGTGCAAGATGAACCATCTCTTCGTCCTTCAATGAAGAATGTCATCTTGATGTTGGAAGGATTAAACCCAATAGTTATGGATGCCATTGCTGCAACTATCACCTTCCTGCTGTTCATTTCCTTATCAGCAGGAACAAGAGCTAAACCACAGATAGAACCTGGTTCTTCACTTTCACCTACTAGTACTCCGTGGCTTTCTCCTTCTGGTCTCTTTGCATTTGGCTTTTATCAACAAGGCAATGGCTTTGTCGTTGGAATTTGGTTGGTGAAGAGTCATACAGTGGTATGGACTGCAAACCGGGATGACCCTCCTGTCACCTCCAACGCAAAGCTTCAACTTACAGAGGATGGAAAGCTAATACTAATTACAGAGCAAGAACAAGGGAAGCTTATTGCTAATGCTAGTGCTACAGCTTCCTCTGCCTCCATGCTTGATTCTGGCAACTTTGTACTATACAATTATAATTCCAGCATCATATGGCAGAGTTTTGATTACCCAACTGATACTCTGTTAGGAGGTCAATCTCTACCCTGTGGAGGCCAATTGATCTCCAGTTTATCAGATATTAACCGCTCAACTGGACGGTTTCATCTCACCGTGCAGGATGGTGGGAGTTTTCTTTTAAATCCCGCAAACACAACTCACACAGTATGGGATGCTTACTCGGGCTTTGAAATTCCTGGTTGCACTCGCAATTATCATCTTTACCTCAATGAAACAGGTCTACTGCAGATCAAGAATAGTAGTAATTGGACGGTAGAGAATGTTCTTACTTATTCATCTTCGCCTAGCAAAGAGAACCAGAACATTATTTGTCGTGCAACCTTGGATTCTGATGGAGTTTTTCGGTTGTATGCTCATCATGTTAACGATGGCAGTGCCACCGGTGGTCAAATAATCGGAAAGTGGCCGATGTTCGGTAGTACATGTCAAGTAAAAGGTTTTTGTGGCTTCAACAGCTACTGTGCAATGAGTGACGCCAACCCAGTGTGCTATTGTCTTGAGGGTTTTGACTTTATAGATGCAAATCAAAAGACTCTTGGTTGCAAAAGGAACTATTCAAAAGCAGAGTGTAGAGATGAGAAAGATGGTGCAGCCTTTTATAACATGGTCTCCATGGACGATATTGCATCTTGGGATTATCCTTATTTCGTGGCTCAAATGTCACAGGAAGAAGAATGCTCCTCTTCATGTTTGGCTGATTGCAACTGTTGGGCTGCACTATATCAATATAATGCATGCAAGAAACATGGGCTGCCTTTGAGATATTTCAGAAGGACAACAGAACTAGAACCAGTTCCTGGTGGATCCTACAAGGCATTCTTAAAGGTGGGAAAAAATGGTCTCAAAAATTGGAAGCAGAATCATAAGCCTTTTCCTGCACACCCACCTCCCATCAAGAGTACAAGCAACAAAGCAATAGTGCAGATCATTGTTGTTACATCAGTATTTACTTTGCTTTTGTGTTCAACGGTTGCAATCTCCAGCCATTACACCTACAAGACTCGTGTATTGAGGTACAAAAGACTCACGGAGATTGAAAGCTTGGGGCTGAATGAAGAGGTGACATTGAAAAGGTTTTCATACAATGAGCTCAAAAGAGCTACAAATAACTTTAAACAAGAGTTGGGTAAGGGTTCATTTGGAGCAGTTTACAAAGGGGCTTTATACAAAGGTAGGAGATTGATTGCAGTGAAGAGACTAGAGAAGTTAGTGGAAGAAGGGGAAAGGGAGTTTCAAGCAGAAGTGCGAGCCATTGGGAAAACACACCACAGGAACCTAGTTAGGTTACTGGGTTTCTGTGCAGAGGGTTCAAAAAGGCTTTTGGTTTATGAATACATGAGCAATGGTTCCCTTGGAAATCTTCTCTTTGGGGATCAAATACGTCCAGAGTGGGATGAGAGGGTGAAAATAGCATTGGACATTGCGAAAGGGATCCTCTATCTCCATGAAGGGTGTGAGGCACCAGTCATTCATTGTGACCTAAAGCCTCAAAACATTTTGATGGATGAGTTTTGGACTGCAAAGATATCTGATTTTGGGCTTGCAAAACTTCTCATGCCAGATCAAACCAGAACATTCACAGGGGTTAGAGGGACAAGAGGGTACATGGCTCCGGAATGGCACAAGAACATCCCAATATCAGTGAAGACAGATGTTTATAGCTATGGAATAGTGCTATTGGAAACTTTATGTTGCAGAAGAAACATTGAAGTTAATGTGTTGGAGCCTGAGGAAGTTCTTCTCTCCGGTTGGGCCTATCAGTGCTTTGTTGGCAGAGAGTTGAAAAAACTTATTCGTTGGGAAGTTGTGGATAATAATGTCCTGGAAAATATGGTTAAGGTGGCACTCTGGTGTATCCAAGAAGAACCTGTTCTTCGACCAACCATGAAGAGTGTGGTGTTGATGTTAGAAGGGATTACTGATATAGCAACTCCTCCTTGTCCAAATTCCAATTCTCAGTGA 4404 0.4189 MLDSGNFVLYGDEQSNVLWQSFDFPTDTILGGQNLTRYDGLVSSKSKSDHSSGRFYLTMQFDGNLVAYPLNSSSVDQEDAYWAAQTSYYQYPSFNLEGFLCLNNLCFNDSIFKPRKKPESSTTSSIYRATLDVDGNFRLYEHQFEGNTTSSSSSSHMEILWQALNDTCQIKGFCGFNSYCSNKSGKAVCECYPGFFPTKSSGNVSLDCVPQTHSKDDCESSEDSKMLYNVTHLENMSWGGLPYSVIPGMKKETCENSCREDCYCGGALYSSSNCSKYKLPLMYGTRRTFQNQLTVVALLKMASGNVTPPILTFDGTNESKGPKVIVDNKGSLIMILALTLGFISLLCLVFAVSIFFTYRRQVYRYTTLSATENLGFTEECSLRSFTFDELVKSTGGFTEEIGRGSFGAVYRGTIGDSNRSIAVKRLEKIADEGEREFRAEITAIARTHHRNLVKLIGFCIDGSKKLLVYEYLSNGSLANLIFNREMKLSWKERIKMALDVARGILYLHEECEVRIIHCNIKPKNILMDEAWTAKISDFGWARLLKPEYSRMQNGDDGKSRYLAPEWHKDASISVKADTYSFGKVLLEIVCRRSNIEIDVSSAEEILLSSWVYQCFVAGQLNKLVTHDEEDVNWKILERMVKVGLWCVQDEPSLRPSMKNVILMLEGLNPIVMDAIAATITFLLFISLSAGTRAKPQIEPGSSLSPTSTPWLSPSGLFAFGFYQQGNGFVVGIWLVKSHTVVWTANRDDPPVTSNAKLQLTEDGKLILITEQEQGKLIANASATASSASMLDSGNFVLYNYNSSIIWQSFDYPTDTLLGGQSLPCGGQLISSLSDINRSTGRFHLTVQDGGSFLLNPANTTHTVWDAYSGFEIPGCTRNYHLYLNETGLLQIKNSSNWTVENVLTYSSSPSKENQNIICRATLDSDGVFRLYAHHVNDGSATGGQIIGKWPMFGSTCQVKGFCGFNSYCAMSDANPVCYCLEGFDFIDANQKTLGCKRNYSKAECRDEKDGAAFYNMVSMDDIASWDYPYFVAQMSQEEECSSSCLADCNCWAALYQYNACKKHGLPLRYFRRTTELEPVPGGSYKAFLKVGKNGLKNWKQNHKPFPAHPPPIKSTSNKAIVQIIVVTSVFTLLLCSTVAISSHYTYKTRVLRYKRLTEIESLGLNEEVTLKRFSYNELKRATNNFKQELGKGSFGAVYKGALYKGRRLIAVKRLEKLVEEGEREFQAEVRAIGKTHHRNLVRLLGFCAEGSKRLLVYEYMSNGSLGNLLFGDQIRPEWDERVKIALDIAKGILYLHEGCEAPVIHCDLKPQNILMDEFWTAKISDFGLAKLLMPDQTRTFTGVRGTRGYMAPEWHKNIPISVKTDVYSYGIVLLETLCCRRNIEVNVLEPEEVLLSGWAYQCFVGRELKKLIRWEVVDNNVLENMVKVALWCIQEEPVLRPTMKSVVLMLEGITDIATPPCPNSNSQ. 1468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01121 1467 Gene3D Phosphorylase Kinase; domain 1 360 471 - -
Seca12g01121 1467 Gene3D Phosphorylase Kinase; domain 1 1145 1259 - -
Seca12g01121 1467 Gene3D Transferase(Phosphotransferase) domain 1 1260 1459 - -
Seca12g01121 1467 Pfam D-mannose binding lectin 739 822 IPR001480 -
Seca12g01121 1467 ProSitePatterns Protein kinases ATP-binding region signature. 401 424 IPR017441 GO:0005524
Seca12g01121 1467 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 706 1463 - -
Seca12g01121 1467 SUPERFAMILY Protein kinase-like (PK-like) 1168 1451 IPR011009 -
Seca12g01121 1467 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 1260 1458 - -
Seca12g01121 1467 Gene3D - 690 810 IPR036426 -
Seca12g01121 1467 FunFam S-receptor-like serine/threonine-protein kinase 365 471 - -
Seca12g01121 1467 ProSiteProfiles Protein kinase domain profile. 395 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01121 1467 ProSitePatterns Protein kinases ATP-binding region signature. 1189 1212 IPR017441 GO:0005524
Seca12g01121 1467 Coils Coil 1211 1231 - -
Seca12g01121 1467 ProSiteProfiles Protein kinase domain profile. 1183 1453 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01121 1467 FunFam Putative receptor-like protein kinase 472 672 - -
Seca12g01121 1467 SUPERFAMILY alpha-D-mannose-specific plant lectins 738 865 IPR036426 -
Seca12g01121 1467 CDD STKc_IRAK 1189 1453 - -
Seca12g01121 1467 SUPERFAMILY alpha-D-mannose-specific plant lectins 1 85 IPR036426 -
Seca12g01121 1467 SMART blect_4 701 812 IPR001480 -
Seca12g01121 1467 FunFam Os04g0303100 protein 732 861 - -
Seca12g01121 1467 CDD B_lectin 711 812 IPR001480 -
Seca12g01121 1467 SMART serkin_6 1183 1450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01121 1467 SMART serkin_6 395 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01121 1467 Pfam Protein kinase domain 398 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01121 1467 Pfam Protein kinase domain 1185 1447 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01121 1467 FunFam S-receptor-like serine/threonine-protein kinase 1154 1259 - -
Seca12g01121 1467 ProSiteProfiles Bulb-type lectin domain profile. 694 810 IPR001480 -
Seca12g01121 1467 SUPERFAMILY Protein kinase-like (PK-like) 379 665 IPR011009 -
Seca12g01121 1467 Gene3D Transferase(Phosphotransferase) domain 1 472 676 - -
Seca12g01121 1467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1303 1315 IPR008271 GO:0004672|GO:0006468
Seca12g01121 1467 Gene3D - 26 172 - -
Seca12g01121 1467 Gene3D - 811 940 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01121 Seca-Chr12 10898801 10905798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01121 385 670 Receptor kinase-like Gene Family AT5G20050 35.831 2.69e-51 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca12g01121 Pkinase 9.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01121 - - gmx:100815958 959.903