Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01117 ATGGTGCAATCAAAGAAGTTCAGAGGTGTCAGGCAGCGTCATTGGGGTTCATGGGTCTCAGAAATTCGACACCCACTTCTCAGGAAGAGAAGGGTGTGGCTAGGCACATTTGAAACAGCAGAGGAAGCAGCACGAGCATATGATCAAGCAGCAATTTTGATGAGTGGTAGAAATGCAAAAACCAATTTCCCAATAACCCAAACTCCAGAAGGTGAGCCAAAGAGTGAGGAAAGCCCTTCGACCTCAAAGGATCTGGAAGAAATCCTACACGCAAAGCTTAGAAAATGTGGCAAGGTACCTTCCCCTTCCATGACCTGTTTGAGGCTTGACACAGAGAACTCCCACATCGGAGTGTGGCAAAAGCGTGCTGGGAGGCGTTCTGATTCAAATTGGGTGATGACGGTTCAGCTGGGAAACTCAAATAAGAGCACAAATAATGAGAGTAATAATAATGCTCTGAATTGTTCATCTGATTTACAGTCTCCATCAACAGGGGAAACAGGACAGGGAGTGGTGAGAGGAGGAGAGATTGATGAAGAGGAGAGAATTGCCCTCCAAATGATAGAGGAACTGCTCAATGACAGGAACTGTCCTAGTCCTAACACTAGTTCATTTAACAATAATATACAACAACCTGAGGATCATGACAGCTTTTTTCTTTAA 663 0.4465 MVQSKKFRGVRQRHWGSWVSEIRHPLLRKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPITQTPEGEPKSEESPSTSKDLEEILHAKLRKCGKVPSPSMTCLRLDTENSHIGVWQKRAGRRSDSNWVMTVQLGNSNKSTNNESNNNALNCSSDLQSPSTGETGQGVVRGGEIDEEERIALQMIEELLNDRNCPSPNTSSFNNNIQQPEDHDSFFL. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01117 220 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700|GO:0006355
Seca12g01117 220 MobiDBLite consensus disorder prediction 61 75 - -
Seca12g01117 220 MobiDBLite consensus disorder prediction 194 220 - -
Seca12g01117 220 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Seca12g01117 220 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Seca12g01117 220 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Seca12g01117 220 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Seca12g01117 220 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 150 - -
Seca12g01117 220 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Seca12g01117 220 MobiDBLite consensus disorder prediction 138 168 - -
Seca12g01117 220 CDD AP2 5 66 IPR001471 GO:0003700|GO:0006355
Seca12g01117 220 MobiDBLite consensus disorder prediction 138 176 - -
Seca12g01117 220 MobiDBLite consensus disorder prediction 195 214 - -
Seca12g01117 220 MobiDBLite consensus disorder prediction 61 83 - -
Seca12g01117 220 SMART rav1_2 6 70 IPR001471 GO:0003700|GO:0006355
Seca12g01117 220 ProSiteProfiles AP2/ERF domain profile. 6 64 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01117 Seca-Chr12 10861704 10863544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01117 1 193 AP2-EREBP Transcription Factor Family AT1G15360 62.069 1.04e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca12g01117 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01117 - - gmx:100787517 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01117 12 10861704 10863544 Seca4g00972 4 15689039 15690453 ECH
Seca12g01117 12 10861704 10863544 Seca12g01117 12 10861704 10863544 ECH