Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01100 ATGATGATGCAGGTGAGTGTTCCATGCAGTAGCCTTTTTGACATAGTGACCGTTCGATGTGGCCACTGCACCAATCTATGGTCCGTCAACATGGCCGCGGCGTTTCAGTCACTGTCATGGCAAGATGTTCAGGGAGGTGGTGGACAGTGCAATAATCCAGAGTATAGGATTGACACTAGTGCTGCAGGCTCCACTTCCAAATGCAACAATAGGATTGCTGCAATGCGTGCACCCACCACTCATCTTGTAACTCAGGAAAGGGTTGTCAACCGCCCTCCCGAGAAGAGGCAGCGCGTACCTTCTGCTTATAATCAGTTCATAAAGGAAGAGATTCAGAGGATCAAAGCCAATAATCCTGATATCAGTCACCGAGAAGCATTCAGTACTGCTGCAAAGAACTGGGCACATTTTCCTCATATTCATTTTGGGCTGATGTTGGAGAGCAACAATCAAGCTAAGATGGACAGTGTCTCTGAGAAGCATTTGATGCCAAGGGCTGCGCTACTGAACAAATAA 516 0.4748 MMMQVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDVQGGGGQCNNPEYRIDTSAAGSTSKCNNRIAAMRAPTTHLVTQERVVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNNQAKMDSVSEKHLMPRAALLNK. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01100 171 CDD HMG-box_SF 98 134 - -
Seca12g01100 171 Gene3D High mobility group box domain 84 140 IPR036910 -
Seca12g01100 171 Pfam YABBY protein 2 144 IPR006780 GO:0007275
Seca12g01100 171 SUPERFAMILY HMG-box 88 137 IPR036910 -
Seca12g01100 171 FunFam Axial regulator YABBY 89 161 - -
Seca12g01100 171 PANTHER PROTEIN YABBY 6-RELATED 2 154 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01100 Seca-Chr12 10677943 10681981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01100 1 154 C2C2-YABBY Transcription Factor Family AT2G26580 70.130 1.10e-73 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca12g01100 YABBY 2.1e-59 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01100 K25796 - gmx:100499942 306.219