Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01096 ATGGCTCAATTAAAGGATGTTGCAATTCTTGTCTTAGTCTTTGCTACTGTGACTGCAGTGTTACTACAAAGCACGGAAGCTGAAGATTACACAGTAGGAGGTTCCATAGGTTGGACTAGTTTTCCACCTGGTGGTGCTTCTTTCTATTCCCAATGGGCTGCAAATTTGACATTCAAAGTAAACGACAATCTAGTGTTTGAGTTCGAATCTGGAAGCCACAGTGTCGCAGTGCTTACCAAGTCTAATTATGACAAGTGTAACGTCAATGAGAATATCCAAAGCTTGGCCACAGGACCAGCTAGAATCACACTCAATCGCACAGGGGAATTCTATTTTAGCTGCACCTTTTCAGGCCATTGCACTAGTGGCCAAAAGTTAACGGTTAAAGTCACTGGTTCTTCTCCTCCTCCTCCTACATTTGGATCAATCCCCACTAGTTCACCTTCCAATGAAGGAGCTCCAACTGGAACAGATGCTATAGAACCTCCACAACAGGGCTCTGCCATGCCTCTGCCTTCAATATTTTGTCTTCAATACTGTCTTCAATATTTTGTCTCAATTTTAGGACACTTAGGCATCCTACCTGATGGTCAGGAAATAGCAGTAAAAAGATTATCAAAAACTTCTGCACAAGGATTCAAGGAATTCAAAAATGAGGTAACACTTACCGCAAAGCTACAACATGTGAATCATGTCCGGTTATTGGGTTTCTGCATTGAAAGAGAGGAACAGATGTTGGTGTATGAGTACATGGCAAATAAAAGCTTGGACTTCTACCTCTTTGATCCTATTAGACGACATATGTTAGACTGGAATAAGCGTGTTAGCATCATTGAAGGAGTTACACAAGGTCTTCTTTATCTTCAAGAATATTCAAGATTCACCATAATTCATAGAGACATAAAAACTAGCAATATTTTATTAGACACTAAGATGAAGCCAAAGATATCAGACTTTGGGATGGCAAGAATATTCACAAAAGATGAACTAGAAGCAAACACTAGCAAGATTGTGGGAACATATTTTGGAGTCCTTCTTCTACAAATTATAAGTGGCAAGAAGACAGCTGGCTATTATGGAGAGAATGAAGATTTAAAGCTCTTGGAGTATGCTTATGAGTTATGGAAAAAAGGAAAAGGTATGGAGTTTGTGGACCATTCACTTGATGATACATCTTCCCCCTGCACATTAATGAGATGCATGCAAATTGCTCTGCTATGCGTCCAAGAACATCCAAATGATAGGCCTTCCATGCTGGAACTGAAAGTTTCTTCAATGTTGAGAAACGAAAATAACTCTCTAGCCACCCCTAAAAGGCCTGCATTTTCAAAAGTGAAAGATGAGGAAGAAATAAATGAGTGTCAACCCCTTGAAATTATATCAGTCAATGATTGA 1395 0.3957 MAQLKDVAILVLVFATVTAVLLQSTEAEDYTVGGSIGWTSFPPGGASFYSQWAANLTFKVNDNLVFEFESGSHSVAVLTKSNYDKCNVNENIQSLATGPARITLNRTGEFYFSCTFSGHCTSGQKLTVKVTGSSPPPPTFGSIPTSSPSNEGAPTGTDAIEPPQQGSAMPLPSIFCLQYCLQYFVSILGHLGILPDGQEIAVKRLSKTSAQGFKEFKNEVTLTAKLQHVNHVRLLGFCIEREEQMLVYEYMANKSLDFYLFDPIRRHMLDWNKRVSIIEGVTQGLLYLQEYSRFTIIHRDIKTSNILLDTKMKPKISDFGMARIFTKDELEANTSKIVGTYFGVLLLQIISGKKTAGYYGENEDLKLLEYAYELWKKGKGMEFVDHSLDDTSSPCTLMRCMQIALLCVQEHPNDRPSMLELKVSSMLRNENNSLATPKRPAFSKVKDEEEINECQPLEIISVND. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01096 464 MobiDBLite consensus disorder prediction 131 164 - -
Seca12g01096 464 CDD Stellacyanin 28 130 - -
Seca12g01096 464 ProSiteProfiles Protein kinase domain profile. 160 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01096 464 FunFam Uncharacterized protein 185 250 - -
Seca12g01096 464 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 188 444 - -
Seca12g01096 464 FunFam Blue copper 26 135 - -
Seca12g01096 464 SUPERFAMILY Protein kinase-like (PK-like) 193 448 IPR011009 -
Seca12g01096 464 Gene3D Phosphorylase Kinase; domain 1 185 250 - -
Seca12g01096 464 SMART serkin_6 185 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01096 464 Pfam Protein tyrosine and serine/threonine kinase 198 331 IPR001245 GO:0004672|GO:0006468
Seca12g01096 464 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 251 342 - -
Seca12g01096 464 SUPERFAMILY Cupredoxins 27 130 IPR008972 -
Seca12g01096 464 Pfam Plastocyanin-like domain 47 124 IPR003245 GO:0009055
Seca12g01096 464 Gene3D - 27 138 IPR008972 -
Seca12g01096 464 ProSiteProfiles Phytocyanin domain profile. 28 132 IPR003245 GO:0009055
Seca12g01096 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 296 308 IPR008271 GO:0004672|GO:0006468
Seca12g01096 464 Gene3D Transferase(Phosphotransferase) domain 1 342 449 - -
Seca12g01096 464 Gene3D Transferase(Phosphotransferase) domain 1 251 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01096 Seca-Chr12 10617829 10623082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01096 190 442 Receptor kinase-like Gene Family AT4G11530 49.091 7.11e-84 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g01096 PK_Tyr_Ser-Thr 3.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01096 - - vun:114175226 424.476