Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01083 ATGGAGCTTCAGCTGGGTCTCGCTCTCCCAACCAATCCCCCTAAACTTGTCGATCTCAATTCTCGTGCTTATGAGGCTAATTTCAATCACAACAAACGTAGTTTCTCTCAACTATTCGACCATGCACCACCAGATCAAAGCACCAACCACGCAGTGCTTCCTACTCTGCCTCTTCTCCCCTTAACGCCAGCTGCCCAACCAAACGACTATGAAGAACACTCCAGCACCCACTGCTCTATAATCACCAACAAGAACGATGGAGATGATGAAGATGCTCTGGTGGGATGGCCACCCCTAAATTATAGGAGGAAGAAAATTCGTTCCAATAACCATGGGGATCATGATGATGATGATGCGGGGAATAATCATATAGTGTGGATTGATCATCATGATCATGATCATGGATCGAATACATACCTGTACGTGAAGGTGAAGATGGAGGGTGTAGGAATCGCTAGAAAAGTTGATCTCAGCATGCACCATTCATTTCAGACGCTCAAGGATACCTTGATGGACATGTTTGGAAAATGTCATCAACAGGACTCAAACAGCTATGAACTGGCTTATCAGGACAAAGAAGGTGATTGGCTTGTTGCTGAAGATGTGCCATGGAGGCAAGTGCAAGATTCTAAAAACCACTTTAAATTGATTATTAATTCAACTAATTAG 669 0.438 MELQLGLALPTNPPKLVDLNSRAYEANFNHNKRSFSQLFDHAPPDQSTNHAVLPTLPLLPLTPAAQPNDYEEHSSTHCSIITNKNDGDDEDALVGWPPLNYRRKKIRSNNHGDHDDDDAGNNHIVWIDHHDHDHGSNTYLYVKVKMEGVGIARKVDLSMHHSFQTLKDTLMDMFGKCHQQDSNSYELAYQDKEGDWLVAEDVPWRQVQDSKNHFKLIINSTN. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01083 222 Gene3D - 134 222 - -
Seca12g01083 222 SUPERFAMILY CAD & PB1 domains 133 211 - -
Seca12g01083 222 ProSiteProfiles PB1 domain profile. 139 222 IPR000270 GO:0005515
Seca12g01083 222 Pfam AUX/IAA family 181 211 IPR033389 -
Seca12g01083 222 Pfam AUX/IAA family 29 178 IPR033389 -
Seca12g01083 222 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 209 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01083 Seca-Chr12 10477682 10478656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01083 142 222 B3 DNA Binding Superfamily AT3G61830 33.333 6.52e-07 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca12g01083 AUX_IAA 3.4e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01083 K14484 - gmx:100808466 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01083 12 10477682 10478656 Seca12g01083 12 10477682 10478656 ECH