Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01076 ATGATGCAGAGAAAAGCCTTCACATTCTTTTATACTGGTGCAGCAACTGAGACAAGGTACTTGAATGCTAGCAATCGAGAACTATGTCCTCCCAATGAAGCTCGACTTTCTTCTGATAATCCTGAACCCCCGCCTCAGGAAAATAAGACTCCTTGTCAGCTCCTTCAATTTACATTCCAAGAACTAAAAGCTGCAACTGGAAATTTCAGACCTGACAGCATTCTTGGTGAGGGTGGATTTGGTTATGTTTTCAAAGGATGGATTGAGGAAGATGGAACTGCCCCAGCAAAACCTGGGTCAGGGATTACAGTGGCTGTCAAAAGCTTGAAGCCAGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAAGTTGACTTTCTTGGACAGCTTCACCATCCTAACCTTGTGAAACTTATTGGCTACTGCATTGAAGATGAACAGCGGCTTCTTGTTTATGAGTTTATGACCCGTGGAAGTCTAGAAAATCATTTATTCAGAAGAACTGTACCTCTTCCGTGGTCCAACAGGGTTAAGATTGCTCTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCAGAACCAGTCATTTACAGAGATTTTAAAACATCTAATATTTTGCTTGACACGGAGTATAATGCGAAGCTTTCAGATTTTGGTCTAGCAAAAGCAGGACCTCAAGGAGACAAGACACACGTTTCTACCAGAGTTGTTGGAACATACGGTTATGCAGCTCCAGAATATGTCATGACAGGACACTTGACAGCTAAAAGTGATGTTTATAGCTTTGGAGTTGTGTTACTTGAGATTTTAACAGGAAGAAGATCAATGGACAAAAAGCGTCCAAGTGGGGAACAGAATCTTGTTTCATGGGCTAGGCCATATTTAGCTGACAAGAGAAAACTGTACCAACTTGTGGATCCTCGCTTGGAACTAAACTATTCTTTAAAAGGAGTGCAGAGAATTTCACAGTTAGCTTATAGTTGCCTCAGTAGAGATCCCAAATGCCGTCCTAACATGGATGAAGTTGTGAAGGCTCTGACTCCATTGCAGGATCTTAATGACCTTGCAATCTTGTCTTATCACTCTCGTTTATCTCAACAAGGGAGACGAAAGAAGAAATCAGATGGAACTCCACAAATCACATACACACAATCCAAGAGCATGAGAGCTTCTCCCTTGAATACTGGCAAGCAGCATCGATGA 1209 0.426 MMQRKAFTFFYTGAATETRYLNASNRELCPPNEARLSSDNPEPPPQENKTPCQLLQFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGITVAVKSLKPDGLQGHREWVAEVDFLGQLHHPNLVKLIGYCIEDEQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQRISQLAYSCLSRDPKCRPNMDEVVKALTPLQDLNDLAILSYHSRLSQQGRRKKKSDGTPQITYTQSKSMRASPLNTGKQHR. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01076 402 Gene3D Transferase(Phosphotransferase) domain 1 155 366 - -
Seca12g01076 402 FunFam Serine/threonine-protein kinase BIK1 37 154 - -
Seca12g01076 402 FunFam Probable serine/threonine-protein kinase PBL8 155 369 - -
Seca12g01076 402 PANTHER OS01G0588500 PROTEIN-RELATED 51 352 - -
Seca12g01076 402 CDD STKc_IRAK 75 351 - -
Seca12g01076 402 MobiDBLite consensus disorder prediction 30 50 - -
Seca12g01076 402 ProSiteProfiles Protein kinase domain profile. 69 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01076 402 MobiDBLite consensus disorder prediction 379 402 - -
Seca12g01076 402 SUPERFAMILY Protein kinase-like (PK-like) 51 355 IPR011009 -
Seca12g01076 402 Gene3D Phosphorylase Kinase; domain 1 45 154 - -
Seca12g01076 402 Pfam Protein tyrosine and serine/threonine kinase 73 348 IPR001245 GO:0004672|GO:0006468
Seca12g01076 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Seca12g01076 402 MobiDBLite consensus disorder prediction 365 402 - -
Seca12g01076 402 ProSitePatterns Protein kinases ATP-binding region signature. 75 107 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01076 Seca-Chr12 10412762 10416809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01076 57 348 Glycoside Hydrolase AT3G07070 55.405 1.96e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca12g01076 PK_Tyr_Ser-Thr 7.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01076 - - aprc:113848012 766.918