Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01040 ATGGCTGTCACTACTTTATTCTTGGTGATATTACTTCAATTGTCAACAATTTTCGGGTCTGCAATTGTCTTACAGTCAAAGGATTGTGGCAATAATTGGGTAGCTCATTCATATTCTAGTCATGGTCAGGAACTATTCTACATAAATGGGAATGTGGTAAATGAAGATGCTTTCTGTAAGGCCCTCCAATTGTATATTGCAAACGGTTGTGATGTGAAGGACTACTTTGGAAGTCAAAACTGTTCTTTGGATGTCTCTTTTGTGAATTTACCTACAAAGGCAGGAAGGAAACTTCTGCAGAAGGATTTAAGCAAGAAATCCACAACACAAGGAGTTTCTAAGCATATGTCAACCAACAATGTTGGTATTTTTGCAGGTGGAGCTTTGTTGGTATGTTGTGCTGTTCTTTGTCCATGTATCTATGGGAAGAGAAGGAAAGCAACTGCTCATGCTGTTCTGTCCAAGGACCCAATTTCAATGGATTCAGCTTCCTCCTTTGAACCCTCTGTTACCGGTAAGATCCCAGCCAGTCCACTTCGGGTGCCCCCTAGTCCATCAAGATTCTCAACGTCTCCAAAACTCAGTAGACTTCAATCATTACATCTCAACCTGAGTCAGGTTGCAAGAGCTACCCGTAATTTCTCAGAATCATTACAAATAGGAGAAGGAGGTTTTGGAACTGTGTACAGGGCTAATTTAGAAGATGGCCTGGTTGTGGCTGTAAAACGTGCAAAAAGGGAACATTTTGAGAGTTTGAGAACGGAATTCAGCAGTGAAGTTGAACTTCTAGCCAAAATTGATCATCGAAACCTGGTAAAGCTACTAGGTTATATTGATAAAGGAAATGAACGCATTCTTATTACAGAGTATGTGCCAAATGGTACTCTAAGAGAACATTTGGATGGTCAGCGTGGTAAAATCCTGGACTTCAATCAGCGCCTTGAAATTGCAATTGATGTTGCTCATGGATTAACCTATCTGCATCTCTATGCAGAAAAGCAAATAATCCACCGAGATGTGAAATCATCCAACATTCTTTTGACAGAAAGCATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAGGGTTGGTCCAGTGAACACTGACCAAACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGACCCTGAGTATATGAAAACATACCAACTCACTCCCAAAAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAGATTCTGACAGGCCGCCGTCCTGTGGAGTTGAAGAAAACTGCCCAAGAGAGGGTTACACTAAGATGGGCCTTCAGGAAGTATAACGAAGGAAGTGTGGTGGAACTTGTGGACCCTTTAATGGAAGAGGCTGTAAATGCAGATGTTCTGATGAAGATGTTTGATTTGGCATTTCAATGTGCAGCACCCGTTCGAGCAGATAGACCTGACATGAAATCAGCGAGTGAGCAATTGTGGGCAATAAGGGCAGATTACCTCAAAAGTGCAAGGAGAGACTAA 1503 0.4138 MAVTTLFLVILLQLSTIFGSAIVLQSKDCGNNWVAHSYSSHGQELFYINGNVVNEDAFCKALQLYIANGCDVKDYFGSQNCSLDVSFVNLPTKAGRKLLQKDLSKKSTTQGVSKHMSTNNVGIFAGGALLVCCAVLCPCIYGKRRKATAHAVLSKDPISMDSASSFEPSVTGKIPASPLRVPPSPSRFSTSPKLSRLQSLHLNLSQVARATRNFSESLQIGEGGFGTVYRANLEDGLVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGYIDKGNERILITEYVPNGTLREHLDGQRGKILDFNQRLEIAIDVAHGLTYLHLYAEKQIIHRDVKSSNILLTESMRAKVADFGFARVGPVNTDQTHISTKVKGTVGYLDPEYMKTYQLTPKSDVYSFGILLLEILTGRRPVELKKTAQERVTLRWAFRKYNEGSVVELVDPLMEEAVNADVLMKMFDLAFQCAAPVRADRPDMKSASEQLWAIRADYLKSARRD. 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01040 500 ProSiteProfiles Protein kinase domain profile. 214 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01040 500 SUPERFAMILY Protein kinase-like (PK-like) 196 489 IPR011009 -
Seca12g01040 500 CDD STKc_IRAK 220 480 - -
Seca12g01040 500 Gene3D Phosphorylase Kinase; domain 1 185 290 - -
Seca12g01040 500 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 82 489 - -
Seca12g01040 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 335 347 IPR008271 GO:0004672|GO:0006468
Seca12g01040 500 Gene3D Transferase(Phosphotransferase) domain 1 291 499 - -
Seca12g01040 500 ProSitePatterns Protein kinases ATP-binding region signature. 220 242 IPR017441 GO:0005524
Seca12g01040 500 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 291 500 - -
Seca12g01040 500 Pfam Protein tyrosine and serine/threonine kinase 219 486 IPR001245 GO:0004672|GO:0006468
Seca12g01040 500 SMART serkin_6 214 488 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g01040 500 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 186 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01040 Seca-Chr12 10003935 10007960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01040 120 490 Receptor kinase-like Gene Family AT3G46290 40.106 7.23e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Seca12g01040 PK_Tyr_Ser-Thr 3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01040 - - aprc:113845864 864.374