Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01039 ATGCATGTTAAATTTCTGTTCTACAGGTGGAGAACTGCCCTTCTGTGGAGAGCTTTCTTCACAGCAGCAATAGTTGCGATTTTTCTTCGTGCTATGATTGATGTGTGTCTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTTGATGCTTATACAGCAAGTATTTCATATCATTCGGCGGACATTCCTCTTGTGTTTTTTCTTGGTGTTATAGGGGGGATACTTGGAAGCTTATATAATTATATGTTGAACAAAGTTCTTCGCATATACAATGTTATCAATGAGAAAGGAACCATTTACAAAATTTTGCTTGCTTGTTTAATATCCATTTTTACATCATGTCTTCTTTTTGGATTGCCATGGCTTGCATCTTGCCGACCTTGTCCACCTGATGCAGTTGAGCCTTGTCCCACAATAGGTCGGTCTGGTATCTACAAGAAATTCCAATGCCCTCCTAATCACTATAATGATCTTGCCAGCCTTATTTTTAACACAAACGATGATGCTATCAGAAATCTATTTAGCAGGAATACTGCAAGTGAGTTTGAGTTTTCATCAACATTCATCTTCTTCATCACATGCTTTTTCTTAAGTATCTTTAGCTGTGGAGTTGTTGTTCCTGCCGGTCTTTTTGTGCCAATTATTGTGACTGGTGCATCTTATGGACGCATTGTTGGAATGTTAGTTGGTAAAAATTCCAATCTTAACCATGGCCTATATGCTGTACTTGGTGCTGCTTCCTTTCTTGGTGGATCTATGAGGACGACAGTTTCTCTGTGTGTAATTATGCTAGAACTGACCAATAACTTGTTATTGCTACCCCTAATCATGATGGTGCTGTTGGTATCCAAGACTGTAGCTGATGCTTTCAATGCAAATATATATGACCTTATAATGAAAGCCAAGGGTTTCCCTTATTTAGAAACTCATGCTGAACCATATATGAGGCAGCTCACTGTAGCTGATGTAGTCACAGGCCCACTTCAGATGTTTAATGCCATTGAGAAGGTTCGTAACATAGTGTTTGTCCTCAAAACTACAAGACATAATGGGTTTCCTGTTATTGATGAGCCTTCACTTTCTGAAGCTCCAGTTTTATTTGGTATAATCCTTCGTGCCCATCTTATCGCGTTGTTGAAGAAGAGAACTTTCTTGTCTGCGCCTATGACAATGAGGGATCGTGTCTTGAAACAGTTTTCAGCAGATGATTTTGCAAAGAACGGTTCAAGCAAAGGTGAAGATATTGAGGATATACAGTTAACGGAAGAAGAGATGGACATGTTCATTGATCTACATCCTTTTACTAATGCTTCGCCTTATACTGTCGTGGAAACAATGTCACTGGGGAAGGCCCTTACACTTTTCCGAGAGGTTGGTTTAAGGCACATGCTAGTGATACCCAAGATACCCAGTAGATCACCAGTAGTGGGTATACTGACACGGCATGATTTCACACCAGAACATATATTGGGTATGCACCCTTTTCTGGTAAGAAGCAGATGGAAAAGATTAAGATTTTGGCAACCCTTTCTAGAAAAAATTTTCTTGGACGTCTAA 1569 0.3952 MHVKFLFYRWRTALLWRAFFTAAIVAIFLRAMIDVCLSGKCGLFGKGGLIMFDAYTASISYHSADIPLVFFLGVIGGILGSLYNYMLNKVLRIYNVINEKGTIYKILLACLISIFTSCLLFGLPWLASCRPCPPDAVEPCPTIGRSGIYKKFQCPPNHYNDLASLIFNTNDDAIRNLFSRNTASEFEFSSTFIFFITCFFLSIFSCGVVVPAGLFVPIIVTGASYGRIVGMLVGKNSNLNHGLYAVLGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLIMMVLLVSKTVADAFNANIYDLIMKAKGFPYLETHAEPYMRQLTVADVVTGPLQMFNAIEKVRNIVFVLKTTRHNGFPVIDEPSLSEAPVLFGIILRAHLIALLKKRTFLSAPMTMRDRVLKQFSADDFAKNGSSKGEDIEDIQLTEEEMDMFIDLHPFTNASPYTVVETMSLGKALTLFREVGLRHMLVIPKIPSRSPVVGILTRHDFTPEHILGMHPFLVRSRWKRLRFWQPFLEKIFLDV. 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01039 522 Pfam Voltage gated chloride channel 7 292 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca12g01039 522 PRINTS Plant CLC chloride channel signature 162 178 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca12g01039 522 PRINTS Plant CLC chloride channel signature 38 45 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca12g01039 522 PRINTS Plant CLC chloride channel signature 20 30 IPR002251 GO:0005247|GO:0006821|GO:0016020
Seca12g01039 522 Gene3D Clc chloride channel 3 312 - -
Seca12g01039 522 ProSiteProfiles CBS domain profile. 438 499 IPR000644 -
Seca12g01039 522 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 10 495 - -
Seca12g01039 522 Gene3D - 313 489 IPR046342 -
Seca12g01039 522 SMART cbs_1 442 493 IPR000644 -
Seca12g01039 522 SMART cbs_1 331 384 IPR000644 -
Seca12g01039 522 SUPERFAMILY CBS-domain pair 314 488 IPR046342 -
Seca12g01039 522 CDD CBS_pair_voltage-gated_CLC_euk_bac 323 491 - -
Seca12g01039 522 Pfam CBS domain 442 488 IPR000644 -
Seca12g01039 522 SUPERFAMILY Clc chloride channel 7 313 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01039 Seca-Chr12 9997637 10003419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01039 10 516 Ion Channels AT5G33280 72.978 0.0 742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01039 K05016 - gmx:100817901 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01039 12 9997637 10003419 Seca12g01039 12 9997637 10003419 ECH