Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01016 ATGGGGAAGAAAAAAAAGCAAGTAGGAGAAACAAATGAAGATAGAGGAAATGAAAGCAAAGTGGGAAATAGCAGCCCCAGAGCATATGACAATGATACTATGGTATTTATATCCATGTCTCAAGAGTTGAAGGATGATGGGAACAAGCTGTTCCAAAAGAGGGACCTTGAAGGAGCTTTACTAAAATATGAGAAAGCCCTCAAATTGCTTCCAAGAAATCATATTGATGTGTCCTATCTGCGGAGTAATATGGCTTCATGTTACATGCAGATGGGACTCAGTGAGTATCCAAGGGCAATTCATGAATGCAATTTGGCCCTCGAAGTGACACCAAAATATAGCAAAGCTCTGTTGAAGAGGGCAAGGTGCTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGAGAGATGTTAGCACTGTTGTGAAGATGGAGCCAAATAATGTCATGGCATTGGAGATCTCAGAAAATGTGAAAAATGCACTTGAGGAGAAAGGATTAAGAGTCAATGATACAATAATTGAGTTACCTCCAGATTATGTTGAACCTCCCAATGCTTTACCTCCAGAAAAGGTAGTGAAAGAGAAGACACGCAAGAAGAAGAGCAATAAAGTGGAAGAGAAGCCTCCTGATAACAAAATTCTAGAAAAGCAGGCCATGGAGAAATTTGATGAGAAGGTGGCTGATATTAAGGAAGTTGTAGAGGAGAAAAGTAATGGTAGAAGGGAAGACCATGTACCTAAGAAAACAGCAAAACTGATTTTTGGTGAGGATATAAGATGTGCTGAATTGCCTGTTAATTTTAGCCTCTTGCAGTTAAGAGAAGTAATTTGTGACCGATTCCCAAACCTAGGAGCTGTTCTTGTCAAATACAGGGACCAAGAAGGTGATTTGGTCACAATCACTTCTGATGATGAATTAAGATGGGCTGAAACAGGATCTCATGGTTCTATCCGGCTGTACATAGTAGAAGCTACTCCTCAGCAGGATCCATTTTTTGAGAAACATAAAGTAAAGGAGGGGAAGATGGTTGGCATTAATGATGCACATGAGAATGGTTGTGTCAGAAAAGCAAAGGAAATTATTAGCTCATCTTGCATTGAGGACTGGATAATTCAGTTTGCCAAACTGTTCAAGAACCATGTTGGGTTTGAATCTGACAGATATTTGAATTTTCATGAACTTGGGATGAAGCTCTATTCTGAGGCTTTGGAGGAGACAGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGAGGATAAGTTTCAAGAGATGACTGCCTTAGCATTGTTCAACTGGGGAAATGTGCATATGTCTAGGGCAAGGAAGAAAGTATATTTCACAGAAGATTCTTCTAAAGATCTTCTATGTGAACAAATCAATAGTTCATATGAATGGGCACAGAAAGAATATGCAAAAGCAGGAGAAAAATATGAAGCAGCCATCGAACATAAGCCAGATTTTTATGAAGGCTTCCTGGCACTAGGGCTGCAGCAATTTGAGCAAGCAAAACTTTCCTGGTATCATGCACTCAGTAATAAAGTAGATTCAGTTACATTGCCTTCCACTGAGGTTCTTCAGCTTTACAACAACGCTGAGGATAATATGGAGAAAGGAATGCAGATATGGGAAAGATCAAAAGAGCAGCACTCTAGTAAAATCTCTAATTCAAAGGATGTTATATTACATGTGCAGAACATGGGGTTGGATGGCCTTTTTAAAAATTTGTCCACAGATGAAATTGCTGCACAGGAAGAAAATATGAGGTCTCAAATAAATCTCCAATGGGGAACCATGCTATATGAACGCTCAATTGCAGAATTCAAATTAGGGATACCAATATGGCATGAGTCTCTAGAAGTTGCAGTTGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTAATGTTGAAGAACCACTGTTCAAATAATACTGCAGTAGATGGTCTAGCGTTCAAAATTGATGAAATAGTACAGGCATGGAGTGAGATGTACAAAGCTAAAAAGTGGCAGAGTGGAATTCCATCATTTCGTTTGGAACCCTTATTTAGAAGGCGAGTTTCAAAACTCTATCATGCCTTTGAGCTAGCATGA 2106 0.3941 MGKKKKQVGETNEDRGNESKVGNSSPRAYDNDTMVFISMSQELKDDGNKLFQKRDLEGALLKYEKALKLLPRNHIDVSYLRSNMASCYMQMGLSEYPRAIHECNLALEVTPKYSKALLKRARCYEALNRLDLALRDVSTVVKMEPNNVMALEISENVKNALEEKGLRVNDTIIELPPDYVEPPNALPPEKVVKEKTRKKKSNKVEEKPPDNKILEKQAMEKFDEKVADIKEVVEEKSNGRREDHVPKKTAKLIFGEDIRCAELPVNFSLLQLREVICDRFPNLGAVLVKYRDQEGDLVTITSDDELRWAETGSHGSIRLYIVEATPQQDPFFEKHKVKEGKMVGINDAHENGCVRKAKEIISSSCIEDWIIQFAKLFKNHVGFESDRYLNFHELGMKLYSEALEETVTSEEAQGLFDMAEDKFQEMTALALFNWGNVHMSRARKKVYFTEDSSKDLLCEQINSSYEWAQKEYAKAGEKYEAAIEHKPDFYEGFLALGLQQFEQAKLSWYHALSNKVDSVTLPSTEVLQLYNNAEDNMEKGMQIWERSKEQHSSKISNSKDVILHVQNMGLDGLFKNLSTDEIAAQEENMRSQINLQWGTMLYERSIAEFKLGIPIWHESLEVAVEKFELAGASPTDIAVMLKNHCSNNTAVDGLAFKIDEIVQAWSEMYKAKKWQSGIPSFRLEPLFRRRVSKLYHAFELA. 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01016 701 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Seca12g01016 701 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Seca12g01016 701 MobiDBLite consensus disorder prediction 1 17 - -
Seca12g01016 701 SUPERFAMILY TPR-like 41 504 IPR011990 GO:0005515
Seca12g01016 701 MobiDBLite consensus disorder prediction 1 29 - -
Seca12g01016 701 CDD PB1 251 321 - -
Seca12g01016 701 SUPERFAMILY CAD & PB1 domains 248 334 - -
Seca12g01016 701 Gene3D Tetratricopeptide repeat domain 38 167 IPR011990 GO:0005515
Seca12g01016 701 SMART PB1_new 247 324 IPR000270 GO:0005515
Seca12g01016 701 PANTHER PROTEIN CLMP1 3 699 IPR044517 -
Seca12g01016 701 Gene3D Tetratricopeptide repeat domain 387 568 IPR011990 GO:0005515
Seca12g01016 701 Gene3D - 245 324 - -
Seca12g01016 701 MobiDBLite consensus disorder prediction 188 210 - -
Seca12g01016 701 SMART tpr_5 78 113 IPR019734 GO:0005515
Seca12g01016 701 SMART tpr_5 40 73 IPR019734 GO:0005515
Seca12g01016 701 SMART tpr_5 114 147 IPR019734 GO:0005515
Seca12g01016 701 Pfam PB1 domain 249 322 IPR000270 GO:0005515
Seca12g01016 701 MobiDBLite consensus disorder prediction 179 210 - -
Seca12g01016 701 ProSiteProfiles PB1 domain profile. 247 324 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01016 Seca-Chr12 9715395 9719986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01016 28 147 Calmodulin-binding Proteins AT3G25230 28.788 1.55e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01016 K26538 - gmx:100807387 1134.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g01016 12 9715395 9719986 Seca12g01016 12 9715395 9719986 ECH