Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g01003 ATGGGTATATTAACCGCTGTGTCTGCTGAAAAAGAGGTTGAAACGGATGGGAGGAAGACCAGGATGATGGAAATGGAGCTTGCTGATGACAAGGGGAGGATGAGGTGCACCATTTTTGGGAATTATGTGGACACATTGAAGGAGTGTGTGGCCTCAGGTGTTGCTCCATTACCGGTGGTTGTGGCCCAACTTTTTAAAGTCAGGCTGTACAGGGGTACTGTTGTTTTACAAAATATGAACAACACATCGAGGATCTTGTGGAATCCTGATATTCCAGAGGCAATTGATTTTAGGAATAGCTTGGCATGTCATGGAATTGACTCTGATGTTGAGATTGGTGTTATTGAGGGGGGAAATCGTGCTGTTCCGCTGTCTGATGAATTCCTTAGATTGTATCCAAGGAAGTCTGTTAATGAATTGCAGATAACTGAGGAGGAAGGGATTTCCATAGTTGATGCCGCCATTGTTTCGGTTATGAAGGACGAACAATGGTGGTATGGGGCTTGCAAGTGTCACAAGGCAGTTACACCAGATGGGGGACTTTACTACTGTTCTAATTGCTCAACTCATGTAGTTGAAGTTACCCCAAGATATAAGTTGAGGGTTGAAGTTTTCCGTTGGGACGACTCTGCTTCCTTTATTCTCTTCGATTCTGACTGTGTTTATCTGCTTGGGAAGACTTGCAAGGATCTGCTTGCAGAGTGCAGGGGTTTAAAGGCCGGTGAGCACCCACCCGATTTCAGGTGCCTCATTGGCAAGGATCTTCTCTTCAAGGTAGAGAAAACAGCTGAATATGCTTTCAGTTACGATGATTCCTTTAAAGTTAAAAAGGTGTGTGATGACAAGGAAATTATTCAACAATATAAGAAATCCTTAAGTGTTGAGACTCCTTTGAAGGTATTCATTGTAAACTTGGTTTTTAAAAACAATTGA 933 0.4277 MGILTAVSAEKEVETDGRKTRMMEMELADDKGRMRCTIFGNYVDTLKECVASGVAPLPVVVAQLFKVRLYRGTVVLQNMNNTSRILWNPDIPEAIDFRNSLACHGIDSDVEIGVIEGGNRAVPLSDEFLRLYPRKSVNELQITEEEGISIVDAAIVSVMKDEQWWYGACKCHKAVTPDGGLYYCSNCSTHVVEVTPRYKLRVEVFRWDDSASFILFDSDCVYLLGKTCKDLLAECRGLKAGEHPPDFRCLIGKDLLFKVEKTAEYAFSYDDSFKVKKVCDDKEIIQQYKKSLSVETPLKVFIVNLVFKNN. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g01003 310 Gene3D - 129 292 IPR012340 -
Seca12g01003 310 Pfam Replication factor-A C terminal domain 154 233 IPR013955 -
Seca12g01003 310 SUPERFAMILY Nucleic acid-binding proteins 133 277 IPR012340 -
Seca12g01003 310 CDD RPA1_DBD_C 151 292 IPR047192 -
Seca12g01003 310 SUPERFAMILY Nucleic acid-binding proteins 1 105 IPR012340 -
Seca12g01003 310 CDD RPA1_DBD_B_like 1 101 - -
Seca12g01003 310 PANTHER OS03G0429900 PROTEIN 158 278 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca12g01003 310 Gene3D - 1 109 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g01003 Seca-Chr12 9581091 9582700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g01003 58 231 Core DNA Replication Machinery Family AT5G08020 27.717 1.25e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g01003 - - lja:Lj3g3v3527180.1 313.538