Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00992 ATGTGTGTGCAGGACGGCGAGCAAGTTGTTCAAGATATGGAGAAAGTTGATAATAGAAGGGTGTCATGGCCTTTGCATTGTGATCTCTTGCATACCCACATGGATAACAGGGAAAAAGGTTCTTCTTTTAGAACTCCCAGAGATCAGATCAGTGCTGAAAATTCGTTTCCTCTGGAAAGCATATGTGAGGATGCAGAGATTGCAGAGAAAAAGCAGAACCTGATAAACTTTGTTCCTACTCTTCGGTCTGGAGAATGGTCTGATATTGGAGGTCGCCCATACATGGAGGATACTCACATATGCATTGGAGACTTGGCAAAGAAATTTGGTTATAATGTACTCTGTGAGGAATCTATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCGCAATTTGTCCGTGATCATCTACCAAGGGTGATTGTTGAGGATGCTGACTTTCCTCTGGAACTTGAGAAGGTGGTCACAAGATCATTTTTGGAGACTGATGCAGAGTTTGCAAAAACATGCTCTATTGAGTCTTCCCTGTCTTCTGGTACAACTGCACTGACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGACTGCCGGGCTGTTTTGTCCCGTTCTGGAGTGGCCATAGAAATGTCAAAAGATCACAGGCCCATGTGCATCAAAGAAAGAATGAGGATTGAGTCCATGGGTGGATTCATTGATGATGGTTACCTGAATGGACAGTTAGGCGTCACTCGTGCTCTAGGTGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGGAAGTGGTGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATTGGCAGTGATGGAATCTGGGATGTTTTCCGTAGCCAAAATGCTGTGGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGTGAAACAGTGTTGCAAGGAAATAATAGGGGAAGCAATAAAGAGAGGAGCAACAGACAATTTGACAGTTGTGATGGTATGCTTTCACTCAGATCCACCACCACCTATGGTTGTAGAAAGGCCTAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATACCTGTTACAAGGATAG 1143 0.4322 MCVQDGEQVVQDMEKVDNRRVSWPLHCDLLHTHMDNREKGSSFRTPRDQISAENSFPLESICEDAEIAEKKQNLINFVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVLCEESISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLETDAEFAKTCSIESSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRSGVAIEMSKDHRPMCIKERMRIESMGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSGSGGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKEIIGEAIKRGATDNLTVVMVCFHSDPPPPMVVERPRVRRSISAEGLQNLKYLLQG. 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00992 380 CDD PP2Cc 82 347 IPR001932 -
Seca12g00992 380 SMART PP2C_4 72 345 IPR001932 -
Seca12g00992 380 Gene3D - 63 350 IPR036457 -
Seca12g00992 380 FunFam Probable protein phosphatase 2C 22 65 350 - -
Seca12g00992 380 PANTHER PROTEIN PHOSPHATASE 2C 69 345 IPR015655 GO:0004722|GO:0006470
Seca12g00992 380 Pfam Protein phosphatase 2C 94 339 IPR001932 -
Seca12g00992 380 ProSitePatterns PPM-type phosphatase domain signature. 121 129 IPR000222 GO:0043169
Seca12g00992 380 SUPERFAMILY PP2C-like 73 348 IPR036457 -
Seca12g00992 380 ProSiteProfiles PPM-type phosphatase domain profile. 82 347 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00992 Seca-Chr12 9506800 9510119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00992 44 380 PP2C-type Phosphatase Gene Family AT2G25620 57.522 3.41e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Seca12g00992 PP2C 2.1e-67 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00992 K14803 - gmx:100782648 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00992 12 9506800 9510119 Seca12g00992 12 9506800 9510119 ECH