Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00989 ATGGGTTCCTCCTCTAGTCGACTTGGCTCTGCCTCTCGCTCTCGCCCTTCTACTTCTAGTCCCAGCACCAGCAGGGTCAACCGATTCAGATTATCTTCCCTTCTCTGTGGCACCTCCACCTCTCGCTCGGTTTATCAGATGGAAGAACATCCATCTGAGCTTCAGGTTGATTCAGCAAGAGATTTCGATGGTGAAATTCAGAAAGTCACAGCGGAATCGTCTTTATCATGTACTGAAGCCAGAATTAACTGTTGTCCCCATGCTGAAACTACAACCTCATCCGATATGAGAACTGAGTTCTGTGGGAATACTACTGTTGAAGGTTCTTCTAGAAATGTTGCAACAAGTAGTCAGAGGAAGTGCTTGTCTGAACGTAAGGAGCTAGTCCCTCCTTATCAGGTAAGTGCTGGTCACAGTCATCATGAATCATATAGTGATAGTAGCAATACAGCTAGTACTTCATTTGTTGAACAGAAGTCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAGGATGCAGTCAATACTGTTGATGATCCAGTGGTTAGTGGTGTCCCTCAAATCTCTTGTGAGACAATGCATCCAAGGAGTTCAAGCCCTCAAGAGCATGGAAATTCCAGTCCTGGTGAAATTTCTGTTGAGAATCACACTGGTCCATTCATATCTATCCAAAGTTCTTCTCCGAATCCTGTTCCTCAAGAGTCCAATATACCAACAACTTCTCCAGTGCCAGAAAATGAACCTCATCGCGAGACAATGCCTTCAGGTTTAGGTATTATTGTGTCCAATCGGGAAAGAGGACAGGGAAATGATGGTGTGCTTCAACTTGATGTGGTCACAATATCTTCCAACATTTTGTCTGGCAGCAATGCAGATGCCAATGATCATGATGCCAGAAGGAATGGTAGAAGATTATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGTGATTCTCCAACCATAGTCTTCTCCACTGGAGGTGCTGATGATCCAGGATCTCAAGATCGATGGCTTGTTGATTTTGGTAGTGATTTATCTAATGATGGGATTGGGGGTGGTTCTGGATATACGGGAAGTAGAATTCACAGATTGAATGATCGAATGCGACACTCAAGATCTGAGATCTGGGAAAGGCTTCGTGGTGGCCTTGATGAGATTGGTCGGTGGAATTCTTCATGTCCATCAGGACTCCATGCAGATGGTATGTGCTCATGCGAGTCTTTCCCAATGCTTGAGGAATCTAGCACTCGAGCAAGTATTTCAAGAATAGTCATGCTGGCTGAGGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCACTTTCTCTATCCATGGTCTCACTCCCTGCACCAGAATCAATTGTTGACTCCTTCCCTCTGAAGTCTCACAAAAAGGTTGATGCAGCTGATGGAGGCAATGATGCTGAACAGTGTTACATATGCCTGGCGGAGTATGAAGAAGGGGACCAGATACGGGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGTGTGGATAAATGGCTAAAGGAAATACACGGCGTTTGTCCTCTATGTCGTGGCAATGTTTGTGGAGGGTTCACAGAATCTTCTTCCCACTCAGAAGTGCAGTCTCATCATTGA 1644 0.4489 MGSSSSRLGSASRSRPSTSSPSTSRVNRFRLSSLLCGTSTSRSVYQMEEHPSELQVDSARDFDGEIQKVTAESSLSCTEARINCCPHAETTTSSDMRTEFCGNTTVEGSSRNVATSSQRKCLSERKELVPPYQVSAGHSHHESYSDSSNTASTSFVEQKSSDPVSVNVSANKDAVNTVDDPVVSGVPQISCETMHPRSSSPQEHGNSSPGEISVENHTGPFISIQSSSPNPVPQESNIPTTSPVPENEPHRETMPSGLGIIVSNRERGQGNDGVLQLDVVTISSNILSGSNADANDHDARRNGRRLFWDAFSRRSSRRLGDSPTIVFSTGGADDPGSQDRWLVDFGSDLSNDGIGGGSGYTGSRIHRLNDRMRHSRSEIWERLRGGLDEIGRWNSSCPSGLHADGMCSCESFPMLEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESIVDSFPLKSHKKVDAADGGNDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSSHSEVQSHH. 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00989 547 MobiDBLite consensus disorder prediction 191 256 - -
Seca12g00989 547 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g00989 547 MobiDBLite consensus disorder prediction 191 247 - -
Seca12g00989 547 MobiDBLite consensus disorder prediction 138 164 - -
Seca12g00989 547 Pfam Ring finger domain 484 527 IPR001841 -
Seca12g00989 547 SMART ring_2 485 526 IPR001841 -
Seca12g00989 547 MobiDBLite consensus disorder prediction 132 164 - -
Seca12g00989 547 SUPERFAMILY RING/U-box 474 530 - -
Seca12g00989 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 450 531 IPR013083 -
Seca12g00989 547 FunFam Putative RING zinc finger domain superfamily protein 452 532 - -
Seca12g00989 547 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 545 - -
Seca12g00989 547 ProSiteProfiles Zinc finger RING-type profile. 485 527 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00989 Seca-Chr12 9482919 9487575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00989 399 531 C3H Transcription Factor Family AT5G45290 53.741 1.61e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00989 - - gmx:100783722 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00989 12 9482919 9487575 Seca12g00989 12 9482919 9487575 ECH