Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00985 ATGGCATTTGATCAGAATTCCGTTCCAATTGATCTACGCGCATTGAACGTGGTTCCGACGATGGCGGAGGAGCTGCACGTGTCGCCGGCCAGCACCACGCCTCCGACTCCGAATTCAGCTCGCGACCTTTTCTACACGCCGTCGGCCTCCGCCACCACCGCCACCTGGTGCGTTCGCCCCATGGCGCATCCTGCTGCTATCGGGTTTAACTACGGTTGTGGCTTTGGTAATCGGGTTGCGCCTGGGAATGCTTTGAATTTGGGAAATTGGGTTGGGGCTAATGGTTTGGACAAGGCCTGCAATGATAGTGTAGCTGTAAATGGTTATGCTTATGGTGGTGCTGTTGGGGGCACCAGAGTGAGTGATGATACCGGGGATGATTCGGTGTCAGGGAGAAAAGTGAAGTTTTTGTGCAGTTTTGGTGGGAAGATTTTGCCTAGGCCTAGTGATGGAATGTTGAGATATGTTGGAGGGCAGACAAGGATCATTAGTGTTAGAAGGGATGTTAGTTTCAATGATTTGGTGCAGAAGATGGTTGAGACTTATGGGCAGCCAGTGGTTATCAAGTATCAACTCCCTGAGGAGGATCTTGATGCGCTTGTCTCTGTTTCATGCCCTGATGATGTTGAAAATATGATGGAGGAGTATGAAAAATTAGTTGAGAAGTCTCCTGATGGTTCTGCTAAGTTAAGGGTTTTTCTGTTTTCTGCCTCAGAGCTTGAATTTTCTGCTGGTGCGGTGCAACTTGGGGACTTGCAAGATACTGGCCAGAAATATTTTGATGCTGTGAATGGACTTTCAGATGGGAATGGAATCAGTGGTGGAATCAAGAGGAAGGGGAGTGTTACAAGTGCAGCTTCAACTCAGAATTCTGATTTGAGTGGGATAGATACTTTTGATCATTCAATTGTTGGTCAAGGGGAGCCAATGGTATCACCTAAGGAGAATGTGGCAGCTTCTCCAGACATAAGTGCAAATTTGGTGATGTCAGAGCCCAGTACAGCAGGTACTTCTGCGGTTTCATTGGGCATGCCTGTGGTTAAGACTAGTCCAACACACACTCCATATTTCCAGAATGAGGTTGAGTTAGAAAAGTCTGTGCCTGTTACTTTATCCCAGCAGCCATTTGGATTGCAGCAATCTGGAATGGAAGTTTCACCCCATTCACCTTATTTGCAGCCTTTTGTTGATACACGCCAGGAGGTTATGAACCATGCAGATTATGTCCACCTGCCTCCCCAGATGGGGTTCCCAAATCCTCATCTTTTAGGGAAGACAGGGCATGTCTTCACACAACAGCAGTTTCATGATAATACTCCTACTAGTTTAGCATTCCATCAGGTTAACCCTGGAGCACAAATGACAATGACTCCAACATCTTCTCATGTTGGTGTAAGACCAACTGTTATTCAGCAACAACCATTGATGCAACAGCAGCAAAATCGTTTGGATCAATACAGTGATGAAAATACATCAGGGATAAGGATTATCCAGCTTCCTGCTGAACAAAGCTACAATACATACCAGGTTCCAGTGAATCAAGTCCCATCTGTCATAGTTGGAGGTAATTATGGTTGGGTTCAGGTTCCTTCACAAGAGCCTGTTGTTTTCTCTGATGGATTATTACCTCAACAACAGGTAATGATCCCTGAGAGAATCCAAAGAGTTGAGGGCTGTACTATGTGTCAGACAAAGTTACCTCATGCCCATTCCGATACAGTGGTTCCGGATCAGCATAGTAGTGGTGCAGGTCCAGTTCCTGATTCAAGCCCAAGTTACCATAGTATGCCTATGGAGGATATTGTAAAAGCTCAAGCTAAAAATAGGGCTAAGCCTATGGTGACAGCACCCTTGAAGGAAGGCATTATTGAACAAGGTGCTGGGACCAGACCCAGGGTCATTAGCAAATTTGAACCTCCTGATGGAGTACCTCATACTGATAATACTGGGCTTTCTCATAATCTTGAGCCTCAGCCTGAAGGTGGGAGGATTTTTATGCAAAAGCCAGAAGAATTTGATCATACCAGAAATTCATTTATCCAGGAAACAATTGAAAGGACAGCTGGAAAACAGTCTCCCAGTGATGGGCTCAAGGCCATGGGAACAGCACCACTGTCTTATCTAGATGATGGTATCCACCAGCATATGGTGCCAGGTGAAAACTGGGTTAAACAGGAGGTGCTTGTCAATAAAGCTGTCAATAATGATATACCTACAGTTGATGGAACCACTATACAAACTTCGGAGTGTATGGTTCAAGGATCTCCAAACGAATATACTAATGAGCTTATTGGTGCTGTTTCTAAATCAAATGAAGTGGATAATTGGATTAGACAGGGCCAACTGAAACCTTTTGATGGAAGGATGGACACCCTCAAGATACAAAATCCTGAAATTTATGCAAGCAATGCTCACTGTTTGCTGCCAATTGATAAACACAATGGGAATGATATATTAGATTACAAAAGTCAGCTTCCTCTAGATGAAGAGGTGATTCTGGATAACAACTTTGGCAAGTCAAAATTGATAGTTGATGCAAATCAAATTAAGATGACAGGTGTGGTGCCAAGTTCTTCTACAGAAATTTCATATGGGCACAATTATAGTTCAGGAGAATACAATGAGGTTGCACAATCCCCTATGCTGGACATTCCTTGCTCAAATCCTCAAACAAAGACTGGAAACCACCACAAGGATGATGCAGCATCATCTTTATCTTCACCATCTGTCAGGTTTAGAGATGTGCAGGATTCTCCAAATTCACTTTTCAGCAATCAGGATATCTGGAATATACAACATGGTACCTTCTTTCCTCCTGCTAGACCTAGCAATGCTGCATTGAAGAAAGAAACCTATTCTCATATGGATTACTTTGGTGAGAATCCAGGCAACTGCGGGAAACAAAATTTAGAAGCACAATTAGATGATGGCCTCTACCAATCATTCAAACAGAATTTAACTTTTGAACAAGGTCGGTCTGGCAAAGGCTCAACAGAAGACCAACAACTTCAAGCTGTTGCTGAAGATGTAGCAGCTTCTGTTCTGCACCCATGTACTCCTCCAAATCCTAACTTGCATGCCAGAGATGTTTCCTGTCGTGAAAACATTGAGGATGACGATGTTCAAAATAATCTAATAGATGATGTCAAGAGCAAGCCACCAGAAAAGGCAAATTTTGGCTTTCCGGCAGCAGTTGGTGTTGGACGATTGCAGGTTATAAAGAACTGTGACCTCGAAGAGCTGTCAGAATTGGGTTCTGGTACTTTTGGGACTGTTTATCATGGAAAATGGAGGGGATCTGATGTTGCAATCAAGCGAATTACTGATAGGTGTTTTTCTGGAAAGCCTTCAGAGAAAGAGCGCATGAGAGAGGATTTCTGGAATGAGGCAATAAAGCTTGCTGACTTGCACCATCCAAATGTGGTAGCTTTCTATGGTGTTGTGCTTGACGGGCCAGGAGGTTCTGTGGCAACAGTAACTGAGTACATGGCTAATGGTTCTCTACGAAATGCCTTGCAGAGGAATGAAAGGAGTCTTGACAAGCGCAAGCGTCTTTTGATTGCAATGGATGTTGCCTTTGGTATGGAGTACCTGCATGGAAAAAATATAGTACACTTTGACTTGAAAAGTGACAACTTACTTGTGAATCTCCGAGATCCACATCGCCCAATATGCAAGGTTTAA 3684 0.4389 MAFDQNSVPIDLRALNVVPTMAEELHVSPASTTPPTPNSARDLFYTPSASATTATWCVRPMAHPAAIGFNYGCGFGNRVAPGNALNLGNWVGANGLDKACNDSVAVNGYAYGGAVGGTRVSDDTGDDSVSGRKVKFLCSFGGKILPRPSDGMLRYVGGQTRIISVRRDVSFNDLVQKMVETYGQPVVIKYQLPEEDLDALVSVSCPDDVENMMEEYEKLVEKSPDGSAKLRVFLFSASELEFSAGAVQLGDLQDTGQKYFDAVNGLSDGNGISGGIKRKGSVTSAASTQNSDLSGIDTFDHSIVGQGEPMVSPKENVAASPDISANLVMSEPSTAGTSAVSLGMPVVKTSPTHTPYFQNEVELEKSVPVTLSQQPFGLQQSGMEVSPHSPYLQPFVDTRQEVMNHADYVHLPPQMGFPNPHLLGKTGHVFTQQQFHDNTPTSLAFHQVNPGAQMTMTPTSSHVGVRPTVIQQQPLMQQQQNRLDQYSDENTSGIRIIQLPAEQSYNTYQVPVNQVPSVIVGGNYGWVQVPSQEPVVFSDGLLPQQQVMIPERIQRVEGCTMCQTKLPHAHSDTVVPDQHSSGAGPVPDSSPSYHSMPMEDIVKAQAKNRAKPMVTAPLKEGIIEQGAGTRPRVISKFEPPDGVPHTDNTGLSHNLEPQPEGGRIFMQKPEEFDHTRNSFIQETIERTAGKQSPSDGLKAMGTAPLSYLDDGIHQHMVPGENWVKQEVLVNKAVNNDIPTVDGTTIQTSECMVQGSPNEYTNELIGAVSKSNEVDNWIRQGQLKPFDGRMDTLKIQNPEIYASNAHCLLPIDKHNGNDILDYKSQLPLDEEVILDNNFGKSKLIVDANQIKMTGVVPSSSTEISYGHNYSSGEYNEVAQSPMLDIPCSNPQTKTGNHHKDDAASSLSSPSVRFRDVQDSPNSLFSNQDIWNIQHGTFFPPARPSNAALKKETYSHMDYFGENPGNCGKQNLEAQLDDGLYQSFKQNLTFEQGRSGKGSTEDQQLQAVAEDVAASVLHPCTPPNPNLHARDVSCRENIEDDDVQNNLIDDVKSKPPEKANFGFPAAVGVGRLQVIKNCDLEELSELGSGTFGTVYHGKWRGSDVAIKRITDRCFSGKPSEKERMREDFWNEAIKLADLHHPNVVAFYGVVLDGPGGSVATVTEYMANGSLRNALQRNERSLDKRKRLLIAMDVAFGMEYLHGKNIVHFDLKSDNLLVNLRDPHRPICKV. 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00985 1227 ProSitePatterns Protein kinases ATP-binding region signature. 1084 1105 IPR017441 GO:0005524
Seca12g00985 1227 Pfam Protein tyrosine and serine/threonine kinase 1080 1216 IPR001245 GO:0004672|GO:0006468
Seca12g00985 1227 CDD PB1_UP2 137 235 - -
Seca12g00985 1227 Gene3D Phosphorylase Kinase; domain 1 1071 1162 - -
Seca12g00985 1227 PANTHER OS05G0427100 PROTEIN-RELATED 127 507 - -
Seca12g00985 1227 MobiDBLite consensus disorder prediction 574 588 - -
Seca12g00985 1227 Gene3D - 154 237 - -
Seca12g00985 1227 SMART PB1_new 148 237 IPR000270 GO:0005515
Seca12g00985 1227 MobiDBLite consensus disorder prediction 571 593 - -
Seca12g00985 1227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1203 1215 IPR008271 GO:0004672|GO:0006468
Seca12g00985 1227 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 153 237 - -
Seca12g00985 1227 MobiDBLite consensus disorder prediction 886 913 - -
Seca12g00985 1227 SMART serkin_6 1078 1224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00985 1227 Gene3D Transferase(Phosphotransferase) domain 1 1163 1225 - -
Seca12g00985 1227 Pfam PB1 domain 153 236 IPR000270 GO:0005515
Seca12g00985 1227 ProSiteProfiles Protein kinase domain profile. 1078 1227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00985 1227 SUPERFAMILY Protein kinase-like (PK-like) 1072 1216 IPR011009 -
Seca12g00985 1227 MobiDBLite consensus disorder prediction 638 659 - -
Seca12g00985 1227 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1071 1165 - -
Seca12g00985 1227 SUPERFAMILY CAD & PB1 domains 149 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00985 Seca-Chr12 9439902 9445292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00985 133 609 MAP Kinase Kinase Kinase AT3G46920 42.083 4.93e-92 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca12g00985 PK_Tyr_Ser-Thr 5.4e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00985 - - mtr:11439273 1608.19