Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00984 ATGGCTTTTCAAGACCATTTCCAAAACGAAATATCTTTCCAGCGTTTCACAGAGGAGCAACAAGAGTTTACAGAGAATAGAGACATGCAACAACAGAGGCTGCCACCACCAACATGGCTCAACAACGCCACCAATCATCAACGTCATCAGCAGAATTTCCTTCACTTGCAAGCGGAGACAACAACAGAGAAAAGCAATAATTGTGAATCGGATGAGTTAAGGGAATACAAAGGTGACATTTTGGGACACCCCCTTTATGATCAGCTCTTATCAGCTCATGTTTCATGCCTAAGGATTGCAACCCCAGTGGACCAGCTTCCAAGAATCGATGCTCAGCTTCAACAGTCACAGCGTGTGGTGGAAAAGTACTCTCACTCTTCCTCCTCACTTGGAAATAATAATAGGGTGGTGGTAGATGAGAAGGAGCTTGATCAGTTTATGACGCATTATGTTCTGTTGCTCTGTGCCTTCAAAGAGCAACTGCAACAACATGTCCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTGGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCAGGCGAAGGAACAGGTGCAACAATGTCTGACGATGAAGATGAGCAAGCAGAGAGCAATGGCAATTTATACGAAGGAAGTTGCCTGGATGGTGCTGATAGTCTTGGCTTTGGTCCTCTTGTCCCCACTGAGACTGAACGCTCTTTGATGGAGCGTGTCAGGCTTGAGTTAAAGCATGAGCTAAAACAGGGTTACAAGAATAAGATTGTGGACATAAGAGAAGAGATTCTAAGAAAGAGACGAGCTGGGAAGCTCCCCGGAGACACCACCTCCCTTTTGAAAGCTTGGTGGCAAGCACATTCTAAATGGCCTTACCCTACTGAGGAAGACAAGGCTAGATTGGTGCAGGAAACAGGCTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCCTCTAGTAACTCCAAAAGCAAGCGCAAGAGGTAG 1032 0.4554 MAFQDHFQNEISFQRFTEEQQEFTENRDMQQQRLPPPTWLNNATNHQRHQQNFLHLQAETTTEKSNNCESDELREYKGDILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSHSSSSLGNNNRVVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDEQAESNGNLYEGSCLDGADSLGFGPLVPTETERSLMERVRLELKHELKQGYKNKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKSKRKR. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00984 343 Gene3D - 267 328 - -
Seca12g00984 343 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 332 - -
Seca12g00984 343 SMART HOX_1 268 333 IPR001356 GO:0003677
Seca12g00984 343 Pfam ELK domain 246 267 IPR005539 GO:0003677
Seca12g00984 343 SUPERFAMILY Homeodomain-like 268 333 IPR009057 -
Seca12g00984 343 FunFam homeobox protein knotted-1-like 3 isoform X1 267 328 - -
Seca12g00984 343 Pfam KNOX2 domain 137 187 IPR005541 GO:0003677|GO:0005634
Seca12g00984 343 Pfam Homeobox KN domain 286 325 IPR008422 GO:0003677|GO:0006355
Seca12g00984 343 SMART ELK_2 246 267 IPR005539 GO:0003677
Seca12g00984 343 MobiDBLite consensus disorder prediction 323 343 - -
Seca12g00984 343 SMART KNOX2_2 133 188 IPR005541 GO:0003677|GO:0005634
Seca12g00984 343 Pfam KNOX1 domain 76 117 IPR005540 GO:0003677|GO:0005634
Seca12g00984 343 ProSiteProfiles ELK domain profile. 246 266 IPR005539 GO:0003677
Seca12g00984 343 ProSiteProfiles 'Homeobox' domain profile. 266 329 IPR001356 GO:0003677
Seca12g00984 343 MobiDBLite consensus disorder prediction 188 210 - -
Seca12g00984 343 SMART KNOX1_2 74 118 IPR005540 GO:0003677|GO:0005634
Seca12g00984 343 CDD homeodomain 269 330 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00984 Seca-Chr12 9430325 9434188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00984 76 343 Homeobox Transcription Factor Family AT5G25220 81.343 7.84e-161 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca12g00984 KNOX2 4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00984 - - gmx:100803673 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00984 12 9430325 9434188 Seca12g00984 12 9430325 9434188 ECH