Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00973 ATGCCGGACGGAGAATCCTCCACCGCCGGTGCCGGCCAACCGCCCATGCAGTCCTCTTCAAGCGTCTCCGATGATGGACAGTCCCTTAGTCTATCCCAAGTAAAAATTCATGAGGACCCCATCATGAAAGATCCCAAGAAAATTGCAAGAAAGTATCAGTTGGAGCTGTGCAAAAAAGCAATGGAGGAAAATATAATTGTTTATTTGGGGACAGGATGTGGGAAGACCCACATTGCTGTTCTGCTTATGCATGAGATGGGTCATTTGATACGGAAGCCCAAGAAGGATGTATGTGTCTTTCTTGCCCCTACAGTGGCTTTAGTTCATCAGCAAGCAAAGGTTATAGAAGACTCTACTGATTTTAAGGTTGGGACTTACTGTGGGAGTTCTAAGCGCTTGAGGCGTCACCAAGATTGGGAGCAGGAGATTGGACAGTATGAGGTTCTTGTCATGACCCCGCAAATATTACTTCACAACTTATCTCATTGTTTTATCAAGATGGAGATGATTGCACTTCTGATATTTGATGAATGTCATCATGCTCAAGTCAAAAGCAACCATCCTTATGCAGAAATCATGAAAGTTTTCTACAAAAATAACTCCACAAAGGTTCCCCGTATATTTGGCATGACCGCTTCTCCTGTTGTAGGAAAAGGTTCTTCTAGTGAAGCAAATCTACCAAAAAGCATCAATAGTCTTGAACATATGCTTGATGCTAAGGTATACTCTGTTGAAGACAAGGAACTGCAATCTTTTTTGACCACTCCCGTGATTAATATATATCCTTATGCCTCAACTGCAAATGGGGAAAATAGCTTGAACTTGAAAATTGAGGAGATTAAACGCCAGTGCATAGCAACCCTTGGTAGGAGTATAGAAGATCATCAGAAACGGATGAACACAAAGAAACTTCTGAGCCGGATACATGACAATGTGGTCTTCTGTCTGGGGAATCTTGGCATTTGGGGTGCATTGCAAGCTAGTCATATTCTTTTAAGCGGTGATCATTCTGAGAGGCATGAACTAGTGGAGGCAGAAGGAGATTCAAGTGATGAGTCTGTGTGTAATAAATATCTTGCTCAGGCAGCTGAACTATTTAATTCACAATGTGACAGTGTATCTGATCCATCTTCTGTGGAAATATTAAAAGAGCCCTTCTTCTCAACAAAGCTTTTGCGCCTCATTGGGATACTGTCCAACTTTAGGTTGCAACAAAACATGAAATGTATAATTTTTGTGAATAGAATTGTGACTGCAAGATCCCTGTCATACATTCTACAGAAGCTCAAGCTTCTAAGACAATGGAGGAGTGATTTTCTAGTAGGAGTCCATTCTGGACTGAAGAGTATGTCACGAAAGACCATGAACGTCATTGTTGAGAAGTTTCGCTCTGGAGAGCTGAATCTATTGGTTGCAACCAAAGTGGGTGAAGAAGGACTTGACATTCAGACATGTTGCCTTGTCATACGATTTGATCTTCCAGAAACTGTTGCTAGCTTTATACAGTCAAGAGGCCGTGCACGTATGCCTCAGTCAGAATATGCATTTTTGGTGGACAGTGGCAATACGAAGGAATTAGACATAATTAATGGTTTTGAAAGAGATGAATCCCGAATGAATATGGAAATTACTGTCCGAACATCCAATGAGACATACATCACCCCTGAGGAAAGAATATTCAGAGTTGAGTCATCTGGTGCTTCTGTCAGCTCGGGATATAGTATCTCATTGCTTCACCAGTATTGTTCAAAGCTTCCACATGACGAGTACTTTGAGCCCAAGCCAAATTTTTATTACTTTGATGATTTAGGGGGGATTGTCTGCCACATTACTTTGCCTTCCAATGCTCCAATACACCAAATTGTCAGTACACCACAGCTGTCTATGGAAGCTTCAAAAAGAGATGCTTGCCTGAAAGCAATAGAAGAACTCTATAAATTAGGTGCTTTAAGTGATTGTCTCTTGCCAGAGCAAGATGATGCAGAGCCAGAGGAGCAAATTTTGGGTTCTTCTGATTCAGATGAGTGTGAAGAGGACATTTCAAGAGGAGAATTACATGAGATGCTTGTTCCTTCTGCCTTTGGACATTCATGGATAAATGAGAAAATTGTCTATCTCAACTCTTACTACATTAAATTTTGTCCCTGTCCAGAGGATAGGGACTACAGAAGGTTTGGTCTATTCATCATGACTCGTCTTCCAATGGAGGCTGAGAAACTGGAACTTGATCTACATCTTGCTCACGGTAGATCTGTGATGACAAAATTTATTCCATTTGGAGTTGTAGAATTTGACAAAGATGAGGTTAAGATGGCAGAGAATTTTCAAGAAATATTCCTCAAAATTATTCTTGATAGATTAGAATTTGCTTCTGAGTTTGTAGACTTGGCTAAGGTTGCTGAAACTCAGACAAGCACATCAACCTTCTACCTTTTGCTTCCAGTCATATTGCAAGAATATGATAATATCATGAAAGTAGATTGGAAGACAGTGAAGAGATGCCTTTGTTCACCAATTTTCAGGCATCCAGCAGATACTGTGGACAAAAAAGTTTTCCCTTTGGATATTCACCTGCAACTTGCCAATGGTTACAGAAGTGTTAGAGATGTTGAGAATAGTTTAGTGTATGCCCCACATAAGAAGCTCTTTTATTTTGTCACTAATATTAGCTATGAGAAGAATGGATTCAGTTCTTATAAAGATTCAGGCACTTCAAGATATGTGGACCACTTCCTTGAAAAGTTTTCCATTCATCTCAAATGCCCTGAACAACCACTTCTGCATGTAAAACCACTCTTCAATTTGCACAACCTACTACACAACCGGAAGCATGAGGATACAGAACCACATGAGCTGGAGGAATACTTAATTTATTTGCCTCCTGAGCTATGTGAACTGAAAATAGTAGGCTTTTCGAAGGATATTGGTAGTTCCATATCTTTGCTACCCTCAATCATGCATCGTCTTGGAAACTTGCTGGTTGCCATTGAACTCAAGCAAATGCTATCTTCTTTCTTCCCAGAGGCCGCAGAAATTAATGTCCTTAGAGTCCTAGAGGCTCTTACCACTGAAAAGTGTCAGGAGCGCTTTTCCCTTGAAAGACTTGAAGTGCTTGGTGATGCTTTCCTTAAATTTGCTGTTGCTCGTCATTTTTTTCTCATGCATGACAACCTTCATGAAGGCGACCTTACGAGGAGACGTTCCAATGTTGTAAATAATTCCAATTTGTTTAAGCTGGCTATTAGGCGCAAGTTGCAGGTCTATATATGCGATCAGGCATTTGATCCCTTGCAGTTCTATGCATTAGGACGTCCTTGCCCGAGAGTTTGTAGCAAGGAAACTGAAGAAAGCATACACTTTTGTTTAAATTCTGATAAGGAACAAGGAAGAGCAACTGAAATCCGTTGTAATAAAAATCACCATTGGTTACATAGGAAAACAATTGCTGATGTTGTTGAAGCTCTGATTGGAGCATTCATAGTTGATAGTGGCTTTAAAGCTGCAATTGCCTTTCTTAAATGGCTAGGCATAGAAGTTGATTTTGAAGCGTCACAAGTTGTTAACATGTGCAGAGGAAGTGCTAGCTATTTTCCTCTTTCTGCTGATGTAGACATTCCATCCCTTGAACGTAAATTAGGACATCACTTTGTTCATAAGGGTCTGCTTCTCCAGGCATTTGTACATCCTTCTTACAGTAAGCATGGAGGAGGCTGTTATCAGCGGTTGGAGTTTCTTGGAGATGCTGTCTTGGATTATTTGATTACTTCATATCTGTACTCAGCTTATCCGAAACTAAAACCTGGTCAATTAACAGATTTGAGATCATTGTCTGTTAATAACAAGGCATTTGCCTGTGTAGCAGTAGATCGCAGTTTTGATAAATTTCTTTTATGTGATTCAAGCGGCCTGTCTGAGGCAATAAAAAAATATGTGGACTATATTAGAAGACCTGTATCATGCAGAGGCATTAATGGAGAGCCAAAATGTCCCAAGGCCCTAGGTGACTTAGTGGAATCTTGTGTTGGTGCCATTCTTCTTGATTCAGGATTCAATTTGAACAAAGTTTGGAAGATTATGACTTCATTCTTGGATCCAATCATGAAATTCTCCTCGAGCTTGCAGCTTAGTCCAATTAGGGATTTGCAAGAACTTTGCCAATCTCACAATTTGGATTTAGGGTTTCTGCCATCAAAACTTACTAAAACTTTTTCTGTTGAAGCCAAAGTGACTGGAAATGGTATATGTGAGACAGCTTTCGGAATCAGCCAAAATAAAAAAGAGGCTTCTAGAATTGCTTCACAGAAACTATTTTCAAACTTAAAGGCTCAAGGCTGGAAACCAAAGTCAAAAACTTTGGAAGATGTTCTGAAATCAACATTTAAGATGGAACCAAAACTTATTGGCTATGATGAAACTCCCATTGATGTAACAGATACTAATACAATTGGACAAGCAATGGTTAATGGAAACCTATGCAGCAAGTCTGACCCAGAAATTCGCCCTATCCGAGAGGTAGTTGGTATGTGCTCCCCATGTGTGAAACCTATTGATCAACACCTTCAATCTTCTCCTAAGGGAAAGCTTAGTGAAACTTTTGAAAATCATGATTGTAGTAGTGACTCATCGAGGACAGGTAATATAAACAAAGGAACAGCAAGATCACGATTGTATGAATTATGTGCTGCTTATTGCTGGAAACCTCCTACATTTGAATGCTGCAAGGAAGTCGGACCAGACCACCTGAAGTTATTCACTTTCAAGGTGACCTTGGAGATAGAAGAGGTCCCAGATACGATTTTTGAGTTTATTGGGGAACCTCAATCAAAGAAGAAAGATGCTGCAGAGAGTGCCGCTGAGGGTGCATTTTGGTACCTGGAACATGAAGGGTACCTGGTTAATGCTAATGGTTAA 4911 0.4022 MPDGESSTAGAGQPPMQSSSSVSDDGQSLSLSQVKIHEDPIMKDPKKIARKYQLELCKKAMEENIIVYLGTGCGKTHIAVLLMHEMGHLIRKPKKDVCVFLAPTVALVHQQAKVIEDSTDFKVGTYCGSSKRLRRHQDWEQEIGQYEVLVMTPQILLHNLSHCFIKMEMIALLIFDECHHAQVKSNHPYAEIMKVFYKNNSTKVPRIFGMTASPVVGKGSSSEANLPKSINSLEHMLDAKVYSVEDKELQSFLTTPVINIYPYASTANGENSLNLKIEEIKRQCIATLGRSIEDHQKRMNTKKLLSRIHDNVVFCLGNLGIWGALQASHILLSGDHSERHELVEAEGDSSDESVCNKYLAQAAELFNSQCDSVSDPSSVEILKEPFFSTKLLRLIGILSNFRLQQNMKCIIFVNRIVTARSLSYILQKLKLLRQWRSDFLVGVHSGLKSMSRKTMNVIVEKFRSGELNLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPQSEYAFLVDSGNTKELDIINGFERDESRMNMEITVRTSNETYITPEERIFRVESSGASVSSGYSISLLHQYCSKLPHDEYFEPKPNFYYFDDLGGIVCHITLPSNAPIHQIVSTPQLSMEASKRDACLKAIEELYKLGALSDCLLPEQDDAEPEEQILGSSDSDECEEDISRGELHEMLVPSAFGHSWINEKIVYLNSYYIKFCPCPEDRDYRRFGLFIMTRLPMEAEKLELDLHLAHGRSVMTKFIPFGVVEFDKDEVKMAENFQEIFLKIILDRLEFASEFVDLAKVAETQTSTSTFYLLLPVILQEYDNIMKVDWKTVKRCLCSPIFRHPADTVDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKLFYFVTNISYEKNGFSSYKDSGTSRYVDHFLEKFSIHLKCPEQPLLHVKPLFNLHNLLHNRKHEDTEPHELEEYLIYLPPELCELKIVGFSKDIGSSISLLPSIMHRLGNLLVAIELKQMLSSFFPEAAEINVLRVLEALTTEKCQERFSLERLEVLGDAFLKFAVARHFFLMHDNLHEGDLTRRRSNVVNNSNLFKLAIRRKLQVYICDQAFDPLQFYALGRPCPRVCSKETEESIHFCLNSDKEQGRATEIRCNKNHHWLHRKTIADVVEALIGAFIVDSGFKAAIAFLKWLGIEVDFEASQVVNMCRGSASYFPLSADVDIPSLERKLGHHFVHKGLLLQAFVHPSYSKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSLSVNNKAFACVAVDRSFDKFLLCDSSGLSEAIKKYVDYIRRPVSCRGINGEPKCPKALGDLVESCVGAILLDSGFNLNKVWKIMTSFLDPIMKFSSSLQLSPIRDLQELCQSHNLDLGFLPSKLTKTFSVEAKVTGNGICETAFGISQNKKEASRIASQKLFSNLKAQGWKPKSKTLEDVLKSTFKMEPKLIGYDETPIDVTDTNTIGQAMVNGNLCSKSDPEIRPIREVVGMCSPCVKPIDQHLQSSPKGKLSETFENHDCSSDSSRTGNINKGTARSRLYELCAAYCWKPPTFECCKEVGPDHLKLFTFKVTLEIEEVPDTIFEFIGEPQSKKKDAAESAAEGAFWYLEHEGYLVNANG. 1637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00973 1636 Gene3D Dicer dimerisation domain 570 665 IPR038248 -
Seca12g00973 1636 Gene3D - 49 304 IPR027417 -
Seca12g00973 1636 Pfam PAZ domain 868 989 IPR003100 GO:0005515
Seca12g00973 1636 SUPERFAMILY dsRNA-binding domain-like 1551 1630 - -
Seca12g00973 1636 ProSiteProfiles Ribonuclease III family domain profile. 1205 1349 IPR000999 GO:0004525|GO:0006396
Seca12g00973 1636 Gene3D - 1558 1627 - -
Seca12g00973 1636 SUPERFAMILY RNase III domain-like 1015 1179 IPR036389 GO:0004525|GO:0006396
Seca12g00973 1636 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 232 IPR014001 -
Seca12g00973 1636 SUPERFAMILY dsRNA-binding domain-like 1331 1441 - -
Seca12g00973 1636 SMART PAZ_2_a_3 846 994 IPR003100 GO:0005515
Seca12g00973 1636 SUPERFAMILY PAZ domain 865 966 IPR036085 GO:0005515
Seca12g00973 1636 FunFam Endoribonuclease dicer-like 1 1200 1370 - -
Seca12g00973 1636 Gene3D - 1369 1446 - -
Seca12g00973 1636 Pfam Helicase conserved C-terminal domain 397 508 IPR001650 -
Seca12g00973 1636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 97 524 IPR027417 -
Seca12g00973 1636 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1376 1442 IPR014720 -
Seca12g00973 1636 SMART ultradead3 45 250 IPR014001 -
Seca12g00973 1636 FunFam Endoribonuclease dicer-like 1 381 544 - -
Seca12g00973 1636 Gene3D Ribonuclease III domain 1013 1175 IPR036389 GO:0004525|GO:0006396
Seca12g00973 1636 Gene3D Ribonuclease III domain 1201 1368 IPR036389 GO:0004525|GO:0006396
Seca12g00973 1636 ProSiteProfiles PAZ domain profile. 868 968 IPR003100 GO:0005515
Seca12g00973 1636 MobiDBLite consensus disorder prediction 10 34 - -
Seca12g00973 1636 FunFam Endoribonuclease dicer-like 1 569 665 - -
Seca12g00973 1636 Pfam DEAD/DEAH box helicase 51 197 IPR011545 GO:0003676|GO:0005524
Seca12g00973 1636 CDD RIBOc 1221 1371 IPR000999 GO:0004525|GO:0006396
Seca12g00973 1636 SUPERFAMILY RNase III domain-like 1204 1368 IPR036389 GO:0004525|GO:0006396
Seca12g00973 1636 FunFam Dicer-like 103 863 966 - -
Seca12g00973 1636 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 551 IPR001650 -
Seca12g00973 1636 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 574 664 IPR005034 GO:0016891
Seca12g00973 1636 ProSiteProfiles Ribonuclease III family domain profile. 1019 1164 IPR000999 GO:0004525|GO:0006396
Seca12g00973 1636 MobiDBLite consensus disorder prediction 1523 1545 - -
Seca12g00973 1636 ProSitePatterns Ribonuclease III family signature. 1240 1248 IPR000999 GO:0004525|GO:0006396
Seca12g00973 1636 CDD RIBOc 1018 1175 IPR000999 GO:0004525|GO:0006396
Seca12g00973 1636 MobiDBLite consensus disorder prediction 1 36 - -
Seca12g00973 1636 SMART helicmild6 420 510 IPR001650 -
Seca12g00973 1636 FunFam Endoribonuclease dicer-like protein 44 283 - -
Seca12g00973 1636 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1552 1626 - -
Seca12g00973 1636 CDD DSRM_DCL_plant 1558 1627 - -
Seca12g00973 1636 Gene3D paz domain 863 966 - -
Seca12g00973 1636 SMART DRBM_3 1552 1626 IPR014720 -
Seca12g00973 1636 SMART DRBM_3 1377 1441 IPR014720 -
Seca12g00973 1636 PANTHER DICER-RELATED 62 1447 - -
Seca12g00973 1636 CDD DEXHc_dicer 47 246 - -
Seca12g00973 1636 Gene3D - 383 545 IPR027417 -
Seca12g00973 1636 Pfam Ribonuclease III domain 1033 1164 IPR000999 GO:0004525|GO:0006396
Seca12g00973 1636 Pfam Ribonuclease III domain 1240 1349 IPR000999 GO:0004525|GO:0006396
Seca12g00973 1636 Pfam Dicer dimerisation domain 574 658 - -
Seca12g00973 1636 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1551 1627 IPR014720 -
Seca12g00973 1636 SMART riboneu5 1220 1372 IPR000999 GO:0004525|GO:0006396
Seca12g00973 1636 SMART riboneu5 1017 1185 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00973 Seca-Chr12 9325705 9346091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00973 408 507 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 2.96e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00973 K11592 - gmx:100818702 2739.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00973 12 9325705 9346091 Seca12g00973 12 9325705 9346091 ECH