Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00972 ATGGTCACGTGTAACAGTATCCTTACCCCGCCATTATTTTCCCGCCATTCCATTCCCGCCAAAGCACCCTTCTTCTTAGTTCTTCCCTTCCCTTCCCTTCCCTTCCCTCCCAGAAAAACTGAAACCCTAACACCCAAACCAAAGAGTCAGGGGTTGAGAGAGAGAATCAGAGAAGAGAAGATGTCAGGGTGGGACGAGGGAGGCGTTTACTACAGCGACCAAGCGCATTCATGGGATGACGGCCGCGGTGAAGCCGAAGCCGCCGCCTCCAACCATTCCCTCCTTCAGAAATTCAAGGAATTCATCCGAAACTTCGAGACCGGTAACAATGTCTTCCCTTACAGAGAAAGCCTCCTCCACAACCCCAAGTTCCTTCTCATTGACATGGAAGATCTCGACTCCTTCGATCCTGATCTTCCAGCCAAACTCCGTTCTTCCCCCGCCGATTTCCTGCCCCTGTTTGAGACGGCGGCAGCACAGGTTCTGGTCAGTTTGAAGACCAAGGTGGCCGGTGATACTGGAGAAATGGAGGATCCGGCGACGGGGGATGTTCAGGTTCTCCTCACCTCCAAAGAGGATCCAGTTTCGATGAGATCGCTCGGGGCTCAATATATATCCAAGCTTGTGAAAATTGCTGGTATTACTATTGCCGCATCCAGGACTAAGGCAAAAGCAACTTATGTCACCCTGATATGTAAGAACTGCAAGAAGGGGAAGCAAGTTCCATGTCGGCCAGGACTTGGTGGAGCAATTGTTCCTCGTTCCTGCGATCATATTCCTCAGCCCGGAGAAGAACCTTGCCCGATTGATCCATGGCTTGTGGTTCCTGACAAGAGCAAGTATGTTGATCAGCAAACCTTGAAACTGCAAGAAAATCCGGAGGATGTTCCAACTGGAGAGCTTCCTAGAAACCTGCTTCTCTCTGTTGATCGTCATCTTGTTCAAACAGTAGTGCCTGGCTCAAGATTGACAATCGTTGGAATCTATAGTATCTACCAGGCTTCCAACTCTTCTCAATCCCAAAAAGGAGCAGTTGCAGTTAGACAGCCTTATATTAGGGTTGTAGGAATAGAAGAAGCAAATGAGGCCAAGTCTCGAGGTCCAGTTGCATTTACACCAGAAGAGATAGAAGAATTCAAAAAATTTGCTGCTGAACCTGATGCATATAAGAATATATGCTCCAAGATTGCTCCATCTATATTTGGGCATGATGATGTCAAAAAGGCTGTGGCTTGTCTTCTTTTTGGAGGGTCGAGAAAGAATTTGCCTGATGGAGTCAAATTAAGAGGTGATATCAATGTGTTGCTTCTGGGGGATCCATCTACAGCAAAGTCACAGTTTCTCAAGTTTGTTGAAAAGACAGCTCCAATTGCTGTCTATACTTCTGGAAAAGGCTCCTCAGCTGCTGGTCTCACAGCTTCTGTAATCCGAGATAGCAGCACTCGTGAGTTTTATCTTGAAGGAGGTGCCATGGTCTTGGCAGATGGAGGTGTTGTGTGCATTGATGAGTTTGACAAGATGAGACCAGAAGATAGGGTTGCCATCCATGAAGCAATGGAACAGCAAACTATATCCATAGCCAAGGCAGGAATAACAACTGTTCTTAATTCAAGGACTTCTGTTCTTGCTGCTGCCAACCCTCCATCAGGACGTTATGATGATCTTAAGACTGCACAGGACAATATTGATTTGCAGACAACTATTCTTTCTAGGTTTGATTTAATCTTCATTGTGAAAGACATCAGAATGTACAGTCAAGACAAGATTATAGCTAGTCATATCATAAAGGTTCATGCATCAGCTGCTACAACGATGGGTGAGAGCAAGGTTTCCAAAGAAGAGAATTGGCTGAAGAGGTATTTACAATATTGTCGAGCTGAATGTCACCCTCGTCTATCAGAATCTGCAGCAACATTACTGCAAAATAATTATGTGAAAATCAGACAGGATATGAGGCAGCAAGCAAATGAAACCGGGGAAGCTGCTGCAATACCAATTACCGTAAGGCAGCTGGAAGCTATTGTTAGGTTGAGTGAGGCACTTGCAAAGATGAAATTATCTCATCTTGCTACTGAGGAGAATGTGCAAGAAGCTATAAGACTTTTCACTGTGTCTACGATGGATGCAGCTAGGTCAGGAATAAACCAACAAATAAATCTTACACCTGACATGGCAAATGAGATAAAGCAAGCAGAAACCCAGATAAAGAGAAGAATCGGTATTGGAAATCACATATCAGAAAGAAGGCTGATTGATGACCTCGGCAGAATGGGAATGAATGAATCTATTGTAAGTACTATGTTGCCACATGACTGA 2316 0.4508 MVTCNSILTPPLFSRHSIPAKAPFFLVLPFPSLPFPPRKTETLTPKPKSQGLRERIREEKMSGWDEGGVYYSDQAHSWDDGRGEAEAAASNHSLLQKFKEFIRNFETGNNVFPYRESLLHNPKFLLIDMEDLDSFDPDLPAKLRSSPADFLPLFETAAAQVLVSLKTKVAGDTGEMEDPATGDVQVLLTSKEDPVSMRSLGAQYISKLVKIAGITIAASRTKAKATYVTLICKNCKKGKQVPCRPGLGGAIVPRSCDHIPQPGEEPCPIDPWLVVPDKSKYVDQQTLKLQENPEDVPTGELPRNLLLSVDRHLVQTVVPGSRLTIVGIYSIYQASNSSQSQKGAVAVRQPYIRVVGIEEANEAKSRGPVAFTPEEIEEFKKFAAEPDAYKNICSKIAPSIFGHDDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPIAVYTSGKGSSAAGLTASVIRDSSTREFYLEGGAMVLADGGVVCIDEFDKMRPEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKVHASAATTMGESKVSKEENWLKRYLQYCRAECHPRLSESAATLLQNNYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHLATEENVQEAIRLFTVSTMDAARSGINQQINLTPDMANEIKQAETQIKRRIGIGNHISERRLIDDLGRMGMNESIVSTMLPHD. 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00972 771 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 87 740 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca12g00972 771 CDD MCM5 391 705 - -
Seca12g00972 771 Gene3D - 90 176 - -
Seca12g00972 771 Pfam MCM AAA-lid domain 616 705 IPR041562 -
Seca12g00972 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 706 IPR027417 -
Seca12g00972 771 ProSiteProfiles MCM family domain profile. 388 594 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g00972 771 SMART mcm 193 707 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 224 236 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 198 213 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 700 717 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 348 360 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein 5 signature 624 639 IPR008048 GO:0003688|GO:0005524|GO:0005634|GO:0006270|GO:0042555
Seca12g00972 771 SUPERFAMILY Nucleic acid-binding proteins 97 354 IPR012340 -
Seca12g00972 771 Pfam MCM N-terminal domain 96 185 IPR027925 -
Seca12g00972 771 Pfam MCM OB domain 197 332 IPR033762 -
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein family signature 568 576 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein family signature 517 530 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein family signature 429 444 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein family signature 489 503 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g00972 771 PRINTS Mini-chromosome maintenance (MCM) protein family signature 541 553 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g00972 771 FunFam DNA helicase 369 720 - -
Seca12g00972 771 Gene3D - 197 332 IPR012340 -
Seca12g00972 771 FunFam DNA helicase 89 177 - -
Seca12g00972 771 Gene3D - 369 724 IPR027417 -
Seca12g00972 771 FunFam DNA helicase 224 282 - -
Seca12g00972 771 Pfam MCM P-loop domain 376 598 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca12g00972 771 Gene3D - 224 282 - -
Seca12g00972 771 ProSitePatterns MCM family signature. 497 505 IPR018525 GO:0003677|GO:0005524|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00972 Seca-Chr12 9314850 9320862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00972 61 768 Core DNA Replication Machinery Family AT2G07690 78.814 0.0 1154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00972 K02209 - gmx:100779483 1267.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g00972 12 9314850 9320862 Seca12g00972 12 9314850 9320862 ECH