Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00970 ATGGCCTCTGACATATCATTTGAAGACCTCAAGAACGAGAATCTGGATCTTGAAAACATTCCTGTTGAGGAAGTTTTTAAGCAGCTAAAATGTACCAGAGAGGGTCTAACAACAACTGAGGGAGAGAACAGGCTCCAAATTTTTGGGCCTAATAAGCTAGAGGAGAAAACTGAGAGCAAGTTCCTTAAATTCTTGGGTTTTATGTGGAATCCACTATCATGGGTTATGGAGGCTGCTGCTGTCATGGCCATTGCATTGGCCAATGGAGGGGGCAAGCCACCGGATTGGCAAGATTTTGTTGGTATTGTTGTATTGCTCATCATCAACTCTACCATTAGTTTCATTGAAGAAAACAATGCAGGCAATGCTGCAGCAGCTTTAATGGCAGGTCTTGCACCCAAAACCAAGGTGTTGAGGGATGGAAAATGGAGTGAACAAGAGGCAGCAATTTTGGTTCCAGGAGATTTGATCAGCATCAAGTTGGGAGATATTGTCCCAGCTGATGCACGTCTTTTGGAGGGAGATCCCCTTAAGATTGACCAATCTGCCCTTACTGGTGAGTCCTTGCCAGTCACTAAACACCCTGGTCAAGAGGTCTTCTCTGGTTCCACTTGCAAACAAGGTGAGTTAGAGGCTGTTGTCATTGCCACTGGTGTCCACACCTTCTTTGGTAAGGCTGCACATCTTGTGGACAGCACCAACAATGTTGGTCACTTCCAAATGGTGTTGACATCCATTGGAAACTTCTGTATTTGCTCTATTGCTGTTGGCATGTTGATTGAGATCATTGTGATGTACCCCATCCAGCAAAGGGCATACAGAGATGGAATTGACAATTTGTTGGTTCTTCTCATTGGAGGTATCCCAATTGCCATGCCAACAGTCTTGTCTGTGACCATGGCTATTGGGTCTCACCGTTTGTCTGAGCAAGGAGCTATCACCAAGAGGATGACAGCCATTGAAGAAATGGCTGGGATGGATGTTCTCTGCAGTGACAAGACTGGAACTCTTACCCTTAACAAGCTTACTGTGGACAAGACCATGATTGAGGTGTTCGTCCAAGGTATGGACAAGGACACCCTTGTCTTACATGCTGCTAGGGCTTCCAGGGTTGAAAACCAGGATGCTATTGATGCTTCAATTGTTGGGATGCTGGGCGACCCCAAGGAGGCAAGAGCAGGAATCACTGAGGTGCATTTCTTGCCTTTCAATCCTGTGGAGAAGCGCACGGCTATTACCTACATTGATGGTAAAGGCAACTGGCATAGAAGCAGCAAGGGTGCTCCTGAGCAAATTATTGAACTTTGTGGCCTTAAGGGAGAGACTTTGAAAAGGGCCCATGGGATCATTGATCAGTTTGCTAATCGTGGTCTACGTTCATTGGGTGTTAGCCGTCAGACTGTTTCAGAAAAGACTAAGGAAAGTGCTGGAGACTCATGGGAGTTCTTGGGTCTCTTGCCCCTCTTTGACCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCGTGCTCTTGACCTTGGTGTCAATGTTAAGATGATCACCGGTGATCAACTTGCCATTGGAAAAGAAACTGGTCGCAGGCTTGGAATGGGCACCAACATGTATCCTTCATCCTCTCTTCTTGGTGAGAACAAGGACCCTGCCATTGCATCAATCCCAATTGATGAACTCATTGAGAAGGCTGATGGATTTGCTGGAGTCTTCCCCGAACACAAATATGAGATTGTGAAGAGATTGCAAGAGAGAAAGCACATTTGTGGAATGACTGGAGATGGTGTGAATGATGCCCCAGCATTGAAGAAGGCAGACATTGGTATTGCTGTGGCTGATGCAACTGATGCTGCAAGAAGTGCCTCAGACATTGTTTTGACAGAGCCAGGACTAAGTGTTATTGTGAGTGCTGTGTTAACTAGCAGGGCCATCTTCCAGAGAATGAAGAACTACACAATATATGCTGTTTCCATCACTATCCGTATTGTGTTTGGGTTCATGCTTGTAGCTTTAATCTGGAAGTTTGACTTCTCACCTTTCATGGTCCTTATCATTGCCATCTTGAATGATGGAACCATCATGACTATCTCTAAGGACAGGGTGAAGCCATCCCCATTACCTGACTCATGGAAGCTTAAAGAAATCTTTGCTACTGGAGTTATTCTTGGAGCTTACATGGCAATCATTACTGTGGTGTTCTTTTATTTAGTTCATGACACTGATTTCTTCACCGTATGTTTTGTGTTATTCTTTCAGAGAGTTTTTGGTGTCAACCCAATTGCAGACAGTGAGGAGCAACTTAACTCAGCTCTTTACCTTCAAGTGAGTATTATTAGTCAGGCACTTATCTTTGTGACCAGGTCAAGGGGTTGGTCTTACATTGAACGCCCAGGCTTTTTGCTTGTTACAGCCTTCTTTTGTGCACAATTGGTGGCTACTATCATTGCTGCACATGCACACTGGGACTTTGCTAGAATCAATGGAATTGGTTGGGGATGGGCTGGAGTAATCTGGATCTTTAGCATTGTTACCTACATTCCTCTTGACATCCTTAAGTTCCTCATCCGTTTGGGATTGTCAGGCAGGGCTTGGGACAACATGCTTGAGAACAAGACTGCTTTCACAACAAAGAAGGACTATGGAAAGGGAGAAAGGGAGGCTCAATGGGCTTTGGCTCAACGCACACTTCATGGTCTCCAAGTTACAGAATCCCATAGGGGCAACCACCATGAACAATCTGAAATTGCTGAGCAAGCTAAGAGGCGTGCTGAGGCTGCCAGGCTCAAAGAGCTCCACACACTCAAGGGACATGTTGAATCTGTGGTGAAATTGAAGGGTCTTGACATTGATACCATCCAACAACACTACACACTCTAA 2868 0.4529 MASDISFEDLKNENLDLENIPVEEVFKQLKCTREGLTTTEGENRLQIFGPNKLEEKTESKFLKFLGFMWNPLSWVMEAAAVMAIALANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKHPGQEVFSGSTCKQGELEAVVIATGVHTFFGKAAHLVDSTNNVGHFQMVLTSIGNFCICSIAVGMLIEIIVMYPIQQRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKTMIEVFVQGMDKDTLVLHAARASRVENQDAIDASIVGMLGDPKEARAGITEVHFLPFNPVEKRTAITYIDGKGNWHRSSKGAPEQIIELCGLKGETLKRAHGIIDQFANRGLRSLGVSRQTVSEKTKESAGDSWEFLGLLPLFDPPRHDSAETIRRALDLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGENKDPAIASIPIDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLVALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVILGAYMAIITVVFFYLVHDTDFFTVCFVLFFQRVFGVNPIADSEEQLNSALYLQVSIISQALIFVTRSRGWSYIERPGFLLVTAFFCAQLVATIIAAHAHWDFARINGIGWGWAGVIWIFSIVTYIPLDILKFLIRLGLSGRAWDNMLENKTAFTTKKDYGKGEREAQWALAQRTLHGLQVTESHRGNHHEQSEIAEQAKRRAEAARLKELHTLKGHVESVVKLKGLDIDTIQQHYTL. 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00970 955 Pfam Cation transporter/ATPase, N-terminus 19 82 IPR004014 -
Seca12g00970 955 PRINTS P-type cation-transporting ATPase superfamily signature 612 624 - -
Seca12g00970 955 PRINTS P-type cation-transporting ATPase superfamily signature 506 516 - -
Seca12g00970 955 PRINTS P-type cation-transporting ATPase superfamily signature 330 344 - -
Seca12g00970 955 PRINTS P-type cation-transporting ATPase superfamily signature 180 194 - -
Seca12g00970 955 PRINTS P-type cation-transporting ATPase superfamily signature 484 495 - -
Seca12g00970 955 PRINTS P-type cation-transporting ATPase superfamily signature 589 608 - -
Seca12g00970 955 PANTHER CALCIUM-TRANSPORTING ATPASE 18 892 - -
Seca12g00970 955 Gene3D - 95 824 - -
Seca12g00970 955 SUPERFAMILY HAD-like 326 636 IPR036412 -
Seca12g00970 955 SFLD p-type atpase 312 641 IPR044492 -
Seca12g00970 955 ProSitePatterns E1-E2 ATPases phosphorylation site. 332 338 IPR018303 -
Seca12g00970 955 FunFam Plasma membrane ATPase 133 217 - -
Seca12g00970 955 SMART Cation_ATPase_N_a_2 16 88 IPR004014 -
Seca12g00970 955 Gene3D - 133 217 - -
Seca12g00970 955 FunFam ATPase 4 plasma membrane-type 573 824 - -
Seca12g00970 955 SUPERFAMILY Calcium ATPase, transmembrane domain M 15 854 IPR023298 -
Seca12g00970 955 SFLD C1.7: P-type atpase like 312 641 - -
Seca12g00970 955 FunFam Plasma membrane ATPase 342 489 - -
Seca12g00970 955 SUPERFAMILY Calcium ATPase, transduction domain A 133 230 IPR008250 -
Seca12g00970 955 CDD P-type_ATPase_H 35 850 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca12g00970 955 Gene3D - 327 626 IPR023214 -
Seca12g00970 955 Pfam E1-E2 ATPase 132 309 - -
Seca12g00970 955 Gene3D - 904 955 - -
Seca12g00970 955 NCBIfam plasma-membrane proton-efflux P-type ATPase 35 814 IPR006534 GO:0008553|GO:0016020|GO:0120029
Seca12g00970 955 Gene3D - 342 489 IPR023299 GO:0000166
Seca12g00970 955 NCBIfam HAD-IC family P-type ATPase 102 364 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00970 955 NCBIfam HAD-IC family P-type ATPase 564 675 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00970 955 FunFam Plasma membrane ATPase 481 637 - -
Seca12g00970 955 Pfam haloacid dehalogenase-like hydrolase 326 603 - -
Seca12g00970 955 PRINTS H+-transporting ATPase (proton pump) signature 620 645 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00970 955 PRINTS H+-transporting ATPase (proton pump) signature 446 464 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00970 955 PRINTS H+-transporting ATPase (proton pump) signature 561 577 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00970 955 PRINTS H+-transporting ATPase (proton pump) signature 589 605 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca12g00970 955 PRINTS H+-transporting ATPase (proton pump) signature 769 790 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00970 Seca-Chr12 9302793 9308331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00970 1 955 Primary Pumps ATPases AT3G42640 83.682 0.0 1629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00970 K01535 - gmx:100798717 1697.95