Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00969 ATGCCATCCCACAAGACATTCAGGATCAAGAAGAAGCTGGCGAAGAAGATGAGGCAGAACAGACCCATCCCTTACTGGATCCGTATGAGGACCGACAACACCATCAGGTATAATGCTAAGCGCAGGCACTGGCGCCGCACCAAACTTGGATTTTAA 156 0.5 MPSHKTFRIKKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF. 52
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00969 51 SUPERFAMILY Ribosomal protein L39e 3 50 IPR023626 -
Seca12g00969 51 Pfam Ribosomal L39 protein 9 49 IPR000077 GO:0003735|GO:0005840|GO:0006412
Seca12g00969 51 Gene3D Ribosomal protein L39e 1 51 IPR023626 -
Seca12g00969 51 ProSitePatterns Ribosomal protein L39e signature. 30 46 IPR020083 GO:0003735|GO:0005840|GO:0006412
Seca12g00969 51 FunFam 60S ribosomal protein-like L39 1 51 - -
Seca12g00969 51 Hamap 50S ribosomal protein L39e [rpl39e]. 1 51 IPR000077 GO:0003735|GO:0005840|GO:0006412
Seca12g00969 51 PANTHER RIBOSOMAL PROTEIN L39E 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g00969 Seca-Chr12 9299192 9300234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00969 1 51 Cytoplasmic Ribosomal Protein Gene Family AT4G31985 90.196 1.38e-29 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00969 K02924 - gmx:100779071 112.849