Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g00966 ATGGCTTCAAAACTCATTACTTTCTTCCTTCTCTTCCTCCCTCTCAAATCACTCTCTTCTGCATATACCCCGTCATGGGTGAAAGCTGGTTATTACTATTCTGGCAGTGAAATTTCTGCTTCAGACATAAAAGCCACGCTTTTCAATCACCTCTTTTGCGCTTTTGCTTATATAAACTCCACCAACTACAACATCTTTATCAACTCTTCGGAGGAACACAAGTTCTCCACCTTCACCGACACTGTAAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGGTGGCAGAGACGACCCTTCAGTGTTCAACTCAATGCTAAACCAATCTTCTCATAGAAAATCTTTCATTGATTCTTCAATCAGTTCAGTAAGGCAATATGGGTTTCAGGGCATAGACCTATATGCAGTCAAGCCAAGGCAGGGTAAGGACCTTATTGCCAATTTTGGAACCCTTTTGAAGGAGTGGAGAGCTGCAATAACTTCTGAGGCAAGAAACTCTAACAAGCCAGAGTTAGCATTGGTGATGGCAGGTTACTTCCTCAAAGCTTCAGACTCCTTCAGTTACCCCTTCGAATCAATGCAGATGAACTTGGATTGGGTACATCTTGTGTCATATAATTACTATCTTCCTAAAAAGGACAATGTCACTGGTTTTCATGCTGCTTTATATGGTCCATCTGGTTGGGATAATACTGATTCTAGTATCAAAGAGTGGAGGAGAAGGGGATTTTCATCTAGCAAGCTTGTAATTGGCTTGCTTTATCATGGATATGCATGGAAACTTGTGAACCCAGGAGACAATGGCGTGGGAAAACCAACATCAGGACCTGCCATTACAAAGGACGGTTCCATGGCTTATAAGCTGATAAAGAGTTACATCAGAAGCTTTGGAGGGGGTGTTGTTTCACATTATAATGCTACTTTTGTGGTGAATCACTTCACAGTTGCATCCACCACTTGGGTTAATTTTGATGATGTGGAGGTAATCAGGGCTAAAGTTTCTTATGCAAAGAAAAATGGCCTACTTGGTTACAGCATGTTCCAATTGAGTAATGATGAAAATTGGGTCCTTTCAAGGGCAGCTCAAGAAGTAGATGAAGATCATCATAAGAGGAGGTTGCTGATAATTGTTCTGCTTACTACTCTGACTTTTGCACTACTATTGGGAATATTATTTTGCTACTACCACCGAGGAACTGTGGCCACTATTACAAGAATATTGTATAAACTAAGGAGATATTTATCAGCAGCTGAAGAAAAAGATCTTGATGGAAATCATTCTGATCTGATAGCATTCAGTTATCTCACAATTAAAGTGGCAACAGATAACTTCTCAAAAGATAATAAGCTTGGAGAGGGGGGATTTGGCACAGTATACAAGGGCAAATTACGGAAGGGACAGGAAATAGCTGTGAAAAGACTCTCAGAAACTTCAAATCAAGGCCTTGAAGAGTTCAAAAATGAGATCACACTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGGATGAGAAGATTCTGATCTATGAATACCTGCCAAACAAAAGCTTAGATCATTTCCTTTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAGCAAGCGTGTCAATATCATTGAAGGGGTTACTCAAGGCCTTGTTTATCTCCAAGAGTATTCAAATTTTACTATAGTCCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGATCATGAGATGAATCCCAAGATATCAGATTTTGGCATGGCTAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAACAGGATCGTGGGAACATATGGGTATGTACCTCCTGAGTATGTGAGGAAAGGCATATACTCAACCAAGTACGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGTGGAAAAAGGACTTCATGTTATTACGGTACACATGAAAATATGAACCTTTTGGAATATGCATATGAGCTGTGGATGGAAGGCAGAGGTGAAGAGTTTATTGATCCATCATTGGATGATACAACATCACCTTGTAAAATCATGAGATGCATGCAGGTGGGTCTGTTGTGCGTTCAAGATAACTCTGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTGCTGAAGAATGAAGCTGCACCTATTGGTACTCCCAAAATGCCCGCTTTTTCAATTAAAAAACATGAAGATGAGGAAGAAAGAGCCCACTATGGGATCAAATTTTCTTCAAACAATGATGTTACAATTTCTGAACTGGCACCAAGATGA 2298 0.3951 MASKLITFFLLFLPLKSLSSAYTPSWVKAGYYYSGSEISASDIKATLFNHLFCAFAYINSTNYNIFINSSEEHKFSTFTDTVKLQNPSVSTLLSIWGGRDDPSVFNSMLNQSSHRKSFIDSSISSVRQYGFQGIDLYAVKPRQGKDLIANFGTLLKEWRAAITSEARNSNKPELALVMAGYFLKASDSFSYPFESMQMNLDWVHLVSYNYYLPKKDNVTGFHAALYGPSGWDNTDSSIKEWRRRGFSSSKLVIGLLYHGYAWKLVNPGDNGVGKPTSGPAITKDGSMAYKLIKSYIRSFGGGVVSHYNATFVVNHFTVASTTWVNFDDVEVIRAKVSYAKKNGLLGYSMFQLSNDENWVLSRAAQEVDEDHHKRRLLIIVLLTTLTFALLLGILFCYYHRGTVATITRILYKLRRYLSAAEEKDLDGNHSDLIAFSYLTIKVATDNFSKDNKLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKKDEKILIYEYLPNKSLDHFLFDPRKSILLDWSKRVNIIEGVTQGLVYLQEYSNFTIVHRDLKASNVLLDHEMNPKISDFGMARIFRKYDLEANTNRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTHENMNLLEYAYELWMEGRGEEFIDPSLDDTTSPCKIMRCMQVGLLCVQDNSADRPSMLEVDSLLKNEAAPIGTPKMPAFSIKKHEDEEERAHYGIKFSSNNDVTISELAPR. 766
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca12g00966 765 Gene3D Transferase(Phosphotransferase) domain 1 523 725 - -
Seca12g00966 765 Gene3D Phosphorylase Kinase; domain 1 410 522 - -
Seca12g00966 765 FunFam Uncharacterized protein 523 727 - -
Seca12g00966 765 FunFam Uncharacterized protein 422 522 - -
Seca12g00966 765 SUPERFAMILY Protein kinase-like (PK-like) 430 736 IPR011009 -
Seca12g00966 765 SUPERFAMILY Chitinase insertion domain 259 326 IPR029070 -
Seca12g00966 765 ProSitePatterns Protein kinases ATP-binding region signature. 453 475 IPR017441 GO:0005524
Seca12g00966 765 Gene3D - 257 326 IPR029070 -
Seca12g00966 765 Pfam Glycosyl hydrolases family 18 31 355 IPR001223 GO:0005975
Seca12g00966 765 SMART 2g34 26 355 IPR011583 GO:0008061
Seca12g00966 765 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 317 762 - -
Seca12g00966 765 SMART serkin_6 447 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00966 765 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 371 IPR001223 GO:0005975
Seca12g00966 765 Gene3D Glycosidases 41 356 - -
Seca12g00966 765 ProSiteProfiles Protein kinase domain profile. 447 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00966 765 Pfam Protein kinase domain 448 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g00966 765 CDD STKc_IRAK 453 720 - -
Seca12g00966 765 SUPERFAMILY (Trans)glycosidases 26 367 IPR017853 -
Seca12g00966 765 ProSitePatterns Serine/Threonine protein kinases active-site signature. 568 580 IPR008271 GO:0004672|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca12g00966 Seca-Chr12 9274629 9278468 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g00966 433 765 Receptor kinase-like Gene Family AT4G11530 50.442 5.64e-114 358
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g00966 Glyco_hydro_18 5.4e-56 CL0058
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g00966 - - aprc:113847882 1235.71