LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g00966	ATGGCTTCAAAACTCATTACTTTCTTCCTTCTCTTCCTCCCTCTCAAATCACTCTCTTCTGCATATACCCCGTCATGGGTGAAAGCTGGTTATTACTATTCTGGCAGTGAAATTTCTGCTTCAGACATAAAAGCCACGCTTTTCAATCACCTCTTTTGCGCTTTTGCTTATATAAACTCCACCAACTACAACATCTTTATCAACTCTTCGGAGGAACACAAGTTCTCCACCTTCACCGACACTGTAAAGCTCCAAAACCCATCTGTTTCAACGCTTTTATCCATCTGGGGTGGCAGAGACGACCCTTCAGTGTTCAACTCAATGCTAAACCAATCTTCTCATAGAAAATCTTTCATTGATTCTTCAATCAGTTCAGTAAGGCAATATGGGTTTCAGGGCATAGACCTATATGCAGTCAAGCCAAGGCAGGGTAAGGACCTTATTGCCAATTTTGGAACCCTTTTGAAGGAGTGGAGAGCTGCAATAACTTCTGAGGCAAGAAACTCTAACAAGCCAGAGTTAGCATTGGTGATGGCAGGTTACTTCCTCAAAGCTTCAGACTCCTTCAGTTACCCCTTCGAATCAATGCAGATGAACTTGGATTGGGTACATCTTGTGTCATATAATTACTATCTTCCTAAAAAGGACAATGTCACTGGTTTTCATGCTGCTTTATATGGTCCATCTGGTTGGGATAATACTGATTCTAGTATCAAAGAGTGGAGGAGAAGGGGATTTTCATCTAGCAAGCTTGTAATTGGCTTGCTTTATCATGGATATGCATGGAAACTTGTGAACCCAGGAGACAATGGCGTGGGAAAACCAACATCAGGACCTGCCATTACAAAGGACGGTTCCATGGCTTATAAGCTGATAAAGAGTTACATCAGAAGCTTTGGAGGGGGTGTTGTTTCACATTATAATGCTACTTTTGTGGTGAATCACTTCACAGTTGCATCCACCACTTGGGTTAATTTTGATGATGTGGAGGTAATCAGGGCTAAAGTTTCTTATGCAAAGAAAAATGGCCTACTTGGTTACAGCATGTTCCAATTGAGTAATGATGAAAATTGGGTCCTTTCAAGGGCAGCTCAAGAAGTAGATGAAGATCATCATAAGAGGAGGTTGCTGATAATTGTTCTGCTTACTACTCTGACTTTTGCACTACTATTGGGAATATTATTTTGCTACTACCACCGAGGAACTGTGGCCACTATTACAAGAATATTGTATAAACTAAGGAGATATTTATCAGCAGCTGAAGAAAAAGATCTTGATGGAAATCATTCTGATCTGATAGCATTCAGTTATCTCACAATTAAAGTGGCAACAGATAACTTCTCAAAAGATAATAAGCTTGGAGAGGGGGGATTTGGCACAGTATACAAGGGCAAATTACGGAAGGGACAGGAAATAGCTGTGAAAAGACTCTCAGAAACTTCAAATCAAGGCCTTGAAGAGTTCAAAAATGAGATCACACTTACAGCAAGACTACAACATGTGAATTTAGTTAGACTTTTGGGTTACTGCACAAAAAAGGATGAGAAGATTCTGATCTATGAATACCTGCCAAACAAAAGCTTAGATCATTTCCTTTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAGCAAGCGTGTCAATATCATTGAAGGGGTTACTCAAGGCCTTGTTTATCTCCAAGAGTATTCAAATTTTACTATAGTCCACCGAGATCTTAAAGCTAGTAATGTTTTGTTAGATCATGAGATGAATCCCAAGATATCAGATTTTGGCATGGCTAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAACAGGATCGTGGGAACATATGGGTATGTACCTCCTGAGTATGTGAGGAAAGGCATATACTCAACCAAGTACGATGTTTATAGTTTTGGAGTTCTTCTCTTGCAAATCATAAGTGGAAAAAGGACTTCATGTTATTACGGTACACATGAAAATATGAACCTTTTGGAATATGCATATGAGCTGTGGATGGAAGGCAGAGGTGAAGAGTTTATTGATCCATCATTGGATGATACAACATCACCTTGTAAAATCATGAGATGCATGCAGGTGGGTCTGTTGTGCGTTCAAGATAACTCTGCAGATAGACCTTCCATGTTAGAAGTTGATTCACTGCTGAAGAATGAAGCTGCACCTATTGGTACTCCCAAAATGCCCGCTTTTTCAATTAAAAAACATGAAGATGAGGAAGAAAGAGCCCACTATGGGATCAAATTTTCTTCAAACAATGATGTTACAATTTCTGAACTGGCACCAAGATGA	2298	0.3951	MASKLITFFLLFLPLKSLSSAYTPSWVKAGYYYSGSEISASDIKATLFNHLFCAFAYINSTNYNIFINSSEEHKFSTFTDTVKLQNPSVSTLLSIWGGRDDPSVFNSMLNQSSHRKSFIDSSISSVRQYGFQGIDLYAVKPRQGKDLIANFGTLLKEWRAAITSEARNSNKPELALVMAGYFLKASDSFSYPFESMQMNLDWVHLVSYNYYLPKKDNVTGFHAALYGPSGWDNTDSSIKEWRRRGFSSSKLVIGLLYHGYAWKLVNPGDNGVGKPTSGPAITKDGSMAYKLIKSYIRSFGGGVVSHYNATFVVNHFTVASTTWVNFDDVEVIRAKVSYAKKNGLLGYSMFQLSNDENWVLSRAAQEVDEDHHKRRLLIIVLLTTLTFALLLGILFCYYHRGTVATITRILYKLRRYLSAAEEKDLDGNHSDLIAFSYLTIKVATDNFSKDNKLGEGGFGTVYKGKLRKGQEIAVKRLSETSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKKDEKILIYEYLPNKSLDHFLFDPRKSILLDWSKRVNIIEGVTQGLVYLQEYSNFTIVHRDLKASNVLLDHEMNPKISDFGMARIFRKYDLEANTNRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGTHENMNLLEYAYELWMEGRGEEFIDPSLDDTTSPCKIMRCMQVGLLCVQDNSADRPSMLEVDSLLKNEAAPIGTPKMPAFSIKKHEDEEERAHYGIKFSSNNDVTISELAPR.	766

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g00966	765	Gene3D	Transferase(Phosphotransferase) domain 1	523	725	-	-
	Seca12g00966	765	Gene3D	Phosphorylase Kinase; domain 1	410	522	-	-
	Seca12g00966	765	FunFam	Uncharacterized protein	523	727	-	-
	Seca12g00966	765	FunFam	Uncharacterized protein	422	522	-	-
	Seca12g00966	765	SUPERFAMILY	Protein kinase-like (PK-like)	430	736	IPR011009	-
	Seca12g00966	765	SUPERFAMILY	Chitinase insertion domain	259	326	IPR029070	-
	Seca12g00966	765	ProSitePatterns	Protein kinases ATP-binding region signature.	453	475	IPR017441	GO:0005524
	Seca12g00966	765	Gene3D	-	257	326	IPR029070	-
	Seca12g00966	765	Pfam	Glycosyl hydrolases family 18	31	355	IPR001223	GO:0005975
	Seca12g00966	765	SMART	2g34	26	355	IPR011583	GO:0008061
	Seca12g00966	765	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	317	762	-	-
	Seca12g00966	765	SMART	serkin_6	447	723	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g00966	765	ProSiteProfiles	Glycosyl hydrolases family 18 (GH18) domain profile.	26	371	IPR001223	GO:0005975
	Seca12g00966	765	Gene3D	Glycosidases	41	356	-	-
	Seca12g00966	765	ProSiteProfiles	Protein kinase domain profile.	447	718	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g00966	765	Pfam	Protein kinase domain	448	650	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca12g00966	765	CDD	STKc_IRAK	453	720	-	-
	Seca12g00966	765	SUPERFAMILY	(Trans)glycosidases	26	367	IPR017853	-
	Seca12g00966	765	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	568	580	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g00966	Seca-Chr12	9274629	9278468	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g00966	433	765	Receptor kinase-like Gene Family	AT4G11530	50.442	5.64e-114	358

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca12g00966		Glyco_hydro_18	5.4e-56	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g00966	-		-	aprc:113847882	1235.71